Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53950.1 | KRH14106 | AT5G35750.1 | 18642946 |
| AT5G53950.1 | KRH74010 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH27280 | Soybean | nucleus | 89.2 | 91.55 |
| KRH26232 | Soybean | nucleus | 65.91 | 63.39 |
| Solyc07g062840.2.1 | Tomato | nucleus | 63.07 | 63.07 |
| KRH55187 | Soybean | nucleus | 65.62 | 61.6 |
| PGSC0003DMT400032280 | Potato | nucleus | 49.15 | 60.28 |
| AT5G53950.1 | Thale cress | nucleus | 58.24 | 54.67 |
| CDX96262 | Canola | nucleus | 56.82 | 54.5 |
| CDY28805 | Canola | nucleus | 56.25 | 53.95 |
| Bra022685.1-P | Field mustard | nucleus | 56.25 | 53.95 |
| Bra003023.1-P | Field mustard | nucleus | 54.26 | 53.5 |
| GSMUA_Achr10P... | Banana | nucleus | 50.28 | 53.31 |
| CDX75813 | Canola | nucleus | 44.89 | 51.3 |
| CDX82444 | Canola | nucleus | 44.89 | 51.13 |
| Bra001586.1-P | Field mustard | nucleus | 44.89 | 51.13 |
| Bra021592.1-P | Field mustard | nucleus | 43.47 | 50.49 |
| CDY20103 | Canola | nucleus | 43.47 | 50.49 |
| AT3G15170.1 | Thale cress | nucleus | 44.32 | 50.32 |
| CDY32316 | Canola | nucleus | 43.75 | 50.16 |
| Zm00001d035266_P001 | Maize | nucleus | 48.01 | 47.34 |
| KRH56898 | Soybean | nucleus | 44.89 | 45.14 |
| KRH41635 | Soybean | nucleus | 40.06 | 45.05 |
| Os06t0344900-00 | Rice | cytosol, nucleus, plastid | 47.73 | 45.04 |
| KRH03497 | Soybean | nucleus | 44.6 | 44.86 |
| KRH60340 | Soybean | nucleus | 40.62 | 44.55 |
| CDX99695 | Canola | mitochondrion | 34.38 | 44.32 |
| CDX98529 | Canola | mitochondrion | 34.38 | 44.32 |
| TraesCS7B01G246300.1 | Wheat | nucleus | 44.6 | 43.37 |
| KRH48487 | Soybean | nucleus | 39.77 | 43.21 |
| TraesCS7D01G342300.1 | Wheat | nucleus | 44.32 | 43.09 |
| TraesCS7A01G334800.1 | Wheat | nucleus | 44.32 | 42.98 |
| KRH39185 | Soybean | nucleus | 40.34 | 42.9 |
| Zm00001d041791_P001 | Maize | nucleus | 43.47 | 41.58 |
| KRH54575 | Soybean | nucleus | 41.48 | 40.9 |
| KRH63309 | Soybean | nucleus | 41.19 | 40.62 |
| HORVU7Hr1G082420.2 | Barley | nucleus | 44.32 | 39.8 |
| KRH61984 | Soybean | nucleus | 40.34 | 39.78 |
| KRH52643 | Soybean | cytoskeleton, cytosol, nucleus | 39.77 | 39.44 |
| KRH40061 | Soybean | nucleus | 40.34 | 39.12 |
| KRG93561 | Soybean | nucleus | 40.06 | 38.95 |
| KRH13649 | Soybean | nucleus | 33.24 | 38.61 |
| KRH18465 | Soybean | nucleus | 38.92 | 38.27 |
| KRH43817 | Soybean | nucleus | 32.67 | 38.08 |
| KRH16201 | Soybean | cytoskeleton, cytosol, nucleus | 40.34 | 38.07 |
| KXG23228 | Sorghum | plastid | 46.88 | 37.16 |
| KRH60880 | Soybean | nucleus | 36.36 | 36.57 |
| KRH01200 | Soybean | mitochondrion, nucleus | 39.2 | 35.57 |
| KRG94783 | Soybean | nucleus | 40.91 | 35.56 |
| KRH06738 | Soybean | nucleus | 40.34 | 34.89 |
| KRH51562 | Soybean | nucleus | 36.36 | 34.22 |
| KRH70130 | Soybean | nucleus | 39.77 | 34.15 |
| KRH08479 | Soybean | nucleus | 38.92 | 33.41 |
| KRG95684 | Soybean | cytosol, nucleus, peroxisome | 27.84 | 33.33 |
| KRH32193 | Soybean | cytosol, nucleus, plastid | 27.56 | 32.77 |
| KRH67403 | Soybean | cytosol, nucleus, plastid | 27.56 | 32.77 |
Protein Annotations
| EntrezGene:100805987 | MapMan:15.5.17 | Gene3D:3.30.310.150 | EMBL:ACUP02008376 | EnsemblPlantsGene:GLYMA_13G274300 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | UniProt:I1M355 | InterPro:IPR003441 | InterPro:IPR036093 | EnsemblPlants:KRH22042 |
| ProteinID:KRH22042 | ProteinID:KRH22042.1 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 |
| PANTHER:PTHR31744 | PANTHER:PTHR31744:SF22 | SUPFAM:SSF101941 | UniParc:UPI000233BA91 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr13:+:37580356..37583227
Molecular Weight (calculated)
39654.3 Da
IEP (calculated)
8.090
GRAVY (calculated)
-0.586
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNSSYHHLD HTEAHLPPGF RFHPTDEELI TYYLLKKVLD STFTGRAIAE VDLNKSEPWE LPEKAKMGEK EWYFFSLRDR KYPTGLRTNR ATEAGYWKAT
101: GKDREIYSSK TCSLVGMKKT LVFYRGRAPK GEKSNWVMHE YRLEGKFAYH YLSRNSKDEW VISRVFQKSN TATNNGGSVM SASSNSKKTR MNSTTSLIHE
201: PSSPSSVFLP PLLDTSPYTN TANFTDRHNG SYDSITKKEH VSCFSTIAAA TTAVVSPNNF NNAGFDLSPS QPLATDPFAR FQRNVDFSAF PSLRSLQDNL
301: QFPFVFSTAA PPFSGGGSGD FLSWPVPEEQ RLIDGVSNMP LGVSELDCMW SY
101: GKDREIYSSK TCSLVGMKKT LVFYRGRAPK GEKSNWVMHE YRLEGKFAYH YLSRNSKDEW VISRVFQKSN TATNNGGSVM SASSNSKKTR MNSTTSLIHE
201: PSSPSSVFLP PLLDTSPYTN TANFTDRHNG SYDSITKKEH VSCFSTIAAA TTAVVSPNNF NNAGFDLSPS QPLATDPFAR FQRNVDFSAF PSLRSLQDNL
301: QFPFVFSTAA PPFSGGGSGD FLSWPVPEEQ RLIDGVSNMP LGVSELDCMW SY
001: MDIPYYHYDH GGDSQYLPPG FRFHPTDEEL ITHYLLRKVL DGCFSSRAIA EVDLNKCEPW QLPGRAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA
101: TGKDREIFSS KTCALVGMKK TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLASTGAVSE GGGGGGATVS VSSGTGPSKK
201: TKVPSTISRN YQEQPSSPSS VSLPPLLDPT TTLGYTDSSC SYDSRSTNTT VTASAITEHV SCFSTVPTTT TALGLDVNSF SRLPPPLGFD FDPFPRFVSR
301: NVSTQSNFRS FQENFNQFPY FGSSSASTMT SAVNLPSFQG GGGVSGMNYW LPATAEENES KVGVLHAGLD CIWNY
101: TGKDREIFSS KTCALVGMKK TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLASTGAVSE GGGGGGATVS VSSGTGPSKK
201: TKVPSTISRN YQEQPSSPSS VSLPPLLDPT TTLGYTDSSC SYDSRSTNTT VTASAITEHV SCFSTVPTTT TALGLDVNSF SRLPPPLGFD FDPFPRFVSR
301: NVSTQSNFRS FQENFNQFPY FGSSSASTMT SAVNLPSFQG GGGVSGMNYW LPATAEENES KVGVLHAGLD CIWNY
Arabidopsis Description
NAC098Protein CUP-SHAPED COTYLEDON 2 [Source:UniProtKB/Swiss-Prot;Acc:O04017]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.