Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400015729 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53950.1 | PGSC0003DMT400015729 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g062840.2.1 | Tomato | nucleus | 95.47 | 77.84 |
| KRH22042 | Soybean | nucleus | 60.28 | 49.15 |
| KRH27280 | Soybean | nucleus | 58.54 | 48.98 |
| VIT_19s0014g02200.t01 | Wine grape | nucleus | 61.32 | 48.48 |
| KRH26232 | Soybean | nucleus | 57.49 | 45.08 |
| KRH55187 | Soybean | nucleus | 56.79 | 43.47 |
| AT5G53950.1 | Thale cress | nucleus | 54.36 | 41.6 |
| Bra003023.1-P | Field mustard | nucleus | 50.52 | 40.62 |
| CDX96262 | Canola | nucleus | 51.22 | 40.05 |
| CDY28805 | Canola | nucleus | 50.87 | 39.78 |
| Bra022685.1-P | Field mustard | nucleus | 50.87 | 39.78 |
| CDX98529 | Canola | mitochondrion | 36.59 | 38.46 |
| CDX99695 | Canola | mitochondrion | 36.59 | 38.46 |
| GSMUA_Achr10P... | Banana | nucleus | 42.51 | 36.75 |
| AT3G15170.1 | Thale cress | nucleus | 37.98 | 35.16 |
| CDX75813 | Canola | nucleus | 37.63 | 35.06 |
| CDX82444 | Canola | nucleus | 37.63 | 34.95 |
| Bra001586.1-P | Field mustard | nucleus | 37.63 | 34.95 |
| CDY20103 | Canola | nucleus | 36.59 | 34.65 |
| Bra021592.1-P | Field mustard | nucleus | 36.59 | 34.65 |
| CDY32316 | Canola | nucleus | 35.89 | 33.55 |
| Zm00001d035266_P001 | Maize | nucleus | 41.46 | 33.33 |
| Os06t0344900-00 | Rice | cytosol, nucleus, plastid | 43.21 | 33.24 |
| PGSC0003DMT400013753 | Potato | nucleus | 37.28 | 31.94 |
| PGSC0003DMT400083083 | Potato | cytosol | 36.93 | 31.55 |
| PGSC0003DMT400050262 | Potato | nucleus | 35.89 | 31.02 |
| Zm00001d041791_P001 | Maize | nucleus | 39.72 | 30.98 |
| PGSC0003DMT400003380 | Potato | nucleus | 33.8 | 30.03 |
| PGSC0003DMT400074048 | Potato | nucleus | 31.71 | 29.84 |
| TraesCS7B01G246300.1 | Wheat | nucleus | 36.59 | 29.01 |
| TraesCS7D01G342300.1 | Wheat | nucleus | 36.24 | 28.73 |
| TraesCS7A01G334800.1 | Wheat | nucleus | 36.24 | 28.65 |
| PGSC0003DMT400076103 | Potato | nucleus | 33.45 | 27.59 |
| KXG23228 | Sorghum | plastid | 41.46 | 26.8 |
| HORVU7Hr1G082420.2 | Barley | nucleus | 36.59 | 26.79 |
| PGSC0003DMT400025690 | Potato | nucleus | 31.71 | 25.63 |
| PGSC0003DMT400056916 | Potato | nucleus | 29.97 | 24.64 |
| PGSC0003DMT400026644 | Potato | cytosol, nucleus, peroxisome | 21.6 | 22.38 |
| PGSC0003DMT400065559 | Potato | nucleus | 21.95 | 22.34 |
| PGSC0003DMT400051915 | Potato | cytosol | 20.21 | 20.42 |
| PGSC0003DMT400038464 | Potato | nucleus | 31.36 | 11.8 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | ProteinID:ACL14374 | ProteinID:ACL14374.1 | EMBL:FJ435166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003441 | InterPro:IPR036093 | UniProt:M1AX54 | InterPro:NAC-dom |
| InterPro:NAC_dom_sf | PFAM:PF02365 | EnsemblPlantsGene:PGSC0003DMG400012403 | PGSC:PGSC0003DMG400012403 | EnsemblPlants:PGSC0003DMT400032280 | PFscan:PS51005 |
| PANTHER:PTHR31744 | PANTHER:PTHR31744:SF22 | SUPFAM:SSF101941 | UniParc:UPI0002958EE2 | SEG:seg | : |
Description
NO APICAL MERISTEM [Source:PGSC_GENE;Acc:PGSC0003DMG400012403]
Coordinates
chr7:+:52974247..52976624
Molecular Weight (calculated)
31986.3 Da
IEP (calculated)
9.552
GRAVY (calculated)
-0.583
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEKEWYFFS LRDRKYPTGL RTNRATEAGY WKATGKDREI FSSKTCALVG MKKTLVFYRG RAPKGEKSNW VMHEYRLDGK FAYHYISRSS KDEWVISRVF
101: QKSTGSNGAA TSTGGGKKRL SSSINMYQEV SSPSSVSHLP PLLDSSPYST TATSATAIVI GDRDHDHHSF KKEHVPCFST TATATITTQS LTFDPSSVFD
201: ISTNTLHALQ PTPSFSSILD STPTNFTNYT RNSTFPSLRS LHENLQLPLF SGGSSSMHGG FSNPMGNWTV PETQKVQQSE LDCMWSY
101: QKSTGSNGAA TSTGGGKKRL SSSINMYQEV SSPSSVSHLP PLLDSSPYST TATSATAIVI GDRDHDHHSF KKEHVPCFST TATATITTQS LTFDPSSVFD
201: ISTNTLHALQ PTPSFSSILD STPTNFTNYT RNSTFPSLRS LHENLQLPLF SGGSSSMHGG FSNPMGNWTV PETQKVQQSE LDCMWSY
001: MDIPYYHYDH GGDSQYLPPG FRFHPTDEEL ITHYLLRKVL DGCFSSRAIA EVDLNKCEPW QLPGRAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA
101: TGKDREIFSS KTCALVGMKK TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLASTGAVSE GGGGGGATVS VSSGTGPSKK
201: TKVPSTISRN YQEQPSSPSS VSLPPLLDPT TTLGYTDSSC SYDSRSTNTT VTASAITEHV SCFSTVPTTT TALGLDVNSF SRLPPPLGFD FDPFPRFVSR
301: NVSTQSNFRS FQENFNQFPY FGSSSASTMT SAVNLPSFQG GGGVSGMNYW LPATAEENES KVGVLHAGLD CIWNY
101: TGKDREIFSS KTCALVGMKK TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLASTGAVSE GGGGGGATVS VSSGTGPSKK
201: TKVPSTISRN YQEQPSSPSS VSLPPLLDPT TTLGYTDSSC SYDSRSTNTT VTASAITEHV SCFSTVPTTT TALGLDVNSF SRLPPPLGFD FDPFPRFVSR
301: NVSTQSNFRS FQENFNQFPY FGSSSASTMT SAVNLPSFQG GGGVSGMNYW LPATAEENES KVGVLHAGLD CIWNY
Arabidopsis Description
NAC098Protein CUP-SHAPED COTYLEDON 2 [Source:UniProtKB/Swiss-Prot;Acc:O04017]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.