Factsheet for PGSC0003DMT400025690

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P20090_001	Banana	cytosol	44.23	49.53
VIT_18s0122g00800.t01	Wine grape	nucleus	56.34	47.06
TraesCS7B01G143900.1	Wheat	nucleus	42.82	45.51
TraesCS7D01G246100.1	Wheat	cytosol	42.82	45.37
Os08t0511200-00	Rice	cytosol	43.94	44.96
EES14261	Sorghum	nucleus	43.1	44.87
TraesCS7A01G247600.1	Wheat	extracellular	42.54	44.81
KRH60880	Soybean	nucleus	43.38	44.0
Bra008259.1-P	Field mustard	cytosol	37.46	41.56
CDY20411	Canola	cytosol	37.46	41.43
CDY45986	Canola	cytosol	37.18	41.25
KRH51562	Soybean	nucleus	43.38	41.18
CDX87602	Canola	cytosol	38.59	40.9
Bra015750.1-P	Field mustard	cytosol	38.59	40.9
CDX88273	Canola	cytosol	38.59	40.65
AT1G76420.1	Thale cress	cytosol	37.75	40.12
PGSC0003DMT400003380	Potato	nucleus	33.8	37.15
PGSC0003DMT400074048	Potato	nucleus	30.99	36.07
Zm00001d031463_P002	Maize	mitochondrion	42.82	36.02
PGSC0003DMT400050262	Potato	nucleus	33.52	35.84
PGSC0003DMT400013753	Potato	nucleus	33.52	35.52
PGSC0003DMT400083083	Potato	cytosol	32.68	34.52
PGSC0003DMT400076103	Potato	nucleus	33.24	33.91
PGSC0003DMT400051915	Potato	cytosol	26.76	33.45
PGSC0003DMT400065559	Potato	nucleus	26.2	32.98
PGSC0003DMT400026644	Potato	cytosol, nucleus, peroxisome	25.35	32.49
PGSC0003DMT400032280	Potato	nucleus	25.63	31.71
PGSC0003DMT400056916	Potato	nucleus	28.45	28.94
PGSC0003DMT400038464	Potato	nucleus	31.83	14.81

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	ProteinID:ACL14367	ProteinID:ACL14367.1	EMBL:FJ435159	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	UniProt:M1ALV6	InterPro:NAC-dom
InterPro:NAC_dom_sf	PFAM:PF02365	EnsemblPlantsGene:PGSC0003DMG400009920	PGSC:PGSC0003DMG400009920	EnsemblPlants:PGSC0003DMT400025690	PFscan:PS51005
PANTHER:PTHR31744	PANTHER:PTHR31744:SF49	SUPFAM:SSF101941	UniParc:UPI000295F764	SEG:seg	:

Description

CUP-SHAPED COTYLEDON3 [Source:PGSC_GENE;Acc:PGSC0003DMG400009920]

Coordinates

chr4:+:71878929..71881754

Molecular Weight (calculated)

40440.7 Da

IEP (calculated)

6.930

GRAVY (calculated)

-0.617

Length

355 amino acids

Sequence
(BLAST)

001: MLAMEEILCE LNREEMMNEQ GLPPGFRFHP TDEELITFYL ASKVFNATFS AGIQIPQVDL NRCEPWELPE VAKMGEREWY FFSLRDRKYP TGLRTNRATG
101: AGYWKATGKD REVYSATNGA LLGMKKTLVF YKGRAPRGEK TKWVMHEYRL DGDFSYRYSS KEEWVICRIL HKVGEKKNAI YEGAGGGGGS TYPTLKTWSS
201: SAAVNSPLTT NPKTLQISHN NHYLFQHHEN DLLKSLFNVS QTTNLLPMNN NVAFSSTKRY KDNKQEEEDM TNKNSSNSVV INQQICMKSS QGNYLSSPLC
301: YNNNDQNDAF VMNNSDWSSS LAGMEEGIIP CNYFNNVVMD NCPIKIAAES WPLHL

Best Arabidopsis Sequence Match ( AT1G76420.1 )
(BLAST)

001: MMLAVEDVLS ELAGEERNER GLPPGFRFHP TDEELITFYL ASKIFHGGLS GIHISEVDLN RCEPWELPEM AKMGEREWYF YSLRDRKYPT GLRTNRATTA
101: GYWKATGKDK EVFSGGGGQL VGMKKTLVFY KGRAPRGLKT KWVMHEYRLE NDHSHRHTCK EEWVICRVFN KTGDRKNVGL IHNQISYLHN HSLSTTHHHH
201: HEALPLLIEP SNKTLTNFPS LLYDDPHQNY NNNNFLHGSS GHNIDELKAL INPVVSQLNG IIFPSGNNNN DEDDFDFNLG VKTEQSSNGN EIDVRDYLEN
301: PLFQEASYGL LGFSSSPGPL HMLLDSPCPL GFQL

Arabidopsis Description

NAC031Protein CUP-SHAPED COTYLEDON 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9S851]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.