Factsheet for PGSC0003DMT400074048

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68680	Canola	nucleus	42.95	62.38
CDY70041	Canola	nucleus	42.95	61.22
GSMUA_Achr9P00570_001	Banana	nucleus	29.51	53.57
CDX75966	Canola	nucleus	45.25	49.11
Bra022319.1-P	Field mustard	nucleus	46.56	46.25
Bra001705.1-P	Field mustard	nucleus	45.25	46.15
TraesCS4D01G071200.1	Wheat	cytosol, mitochondrion, nucleus	45.25	46.15
CDY51941	Canola	nucleus	45.25	46.15
Bra037585.1-P	Field mustard	nucleus	45.25	46.0
Solyc06g069100.1.1	Tomato	nucleus	74.75	45.88
GSMUA_Achr8P18420_001	Banana	nucleus	43.28	45.83
TraesCS4B01G072400.1	Wheat	cytosol, mitochondrion, nucleus	44.92	45.82
TraesCS4A01G242700.1	Wheat	cytosol, mitochondrion, nucleus	44.92	45.82
CDY18519	Canola	nucleus	45.25	45.7
HORVU4Hr1G012030.1	Barley	cytosol, mitochondrion, nucleus	44.59	45.48
PGSC0003DMT400013753	Potato	nucleus	49.51	45.07
CDY69369	Canola	nucleus	44.92	45.07
CDY67593	Canola	nucleus	45.25	44.95
AT3G18400.1	Thale cress	nucleus	46.23	44.9
VIT_17s0000g03660.t01	Wine grape	nucleus	46.89	43.73
KRH60340	Soybean	nucleus	45.57	43.3
KRH48487	Soybean	nucleus	45.57	42.9
KRH41635	Soybean	nucleus	43.61	42.49
Zm00001d033308_P001	Maize	nucleus	44.26	41.41
GSMUA_Achr10P...	Banana	nucleus	44.26	41.16
KRH39185	Soybean	nucleus	44.59	41.09
EER93792	Sorghum	cytosol, mitochondrion, nucleus	44.59	39.88
Os03t0624600-01	Rice	cytosol, mitochondrion, nucleus	41.97	39.63
Zm00001d013717_P001	Maize	nucleus	42.3	39.09
PGSC0003DMT400076103	Potato	nucleus	44.59	39.08
PGSC0003DMT400003380	Potato	nucleus	40.98	38.7
PGSC0003DMT400083083	Potato	cytosol	42.3	38.39
PGSC0003DMT400050262	Potato	nucleus	41.31	37.95
PGSC0003DMT400032280	Potato	nucleus	29.84	31.71
PGSC0003DMT400026644	Potato	cytosol, nucleus, peroxisome	28.2	31.05
PGSC0003DMT400025690	Potato	nucleus	36.07	30.99
PGSC0003DMT400065559	Potato	nucleus	28.52	30.85
PGSC0003DMT400056916	Potato	nucleus	35.08	30.66
PGSC0003DMT400051915	Potato	cytosol	27.87	29.93
PGSC0003DMT400038464	Potato	nucleus	42.62	17.04

Protein Annotations

EntrezGene:102590983	MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	UniProt:M1CT22	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365
EnsemblPlantsGene:PGSC0003DMG400028779	PGSC:PGSC0003DMG400028779	EnsemblPlants:PGSC0003DMT400074048	PFscan:PS51005	PANTHER:PTHR31744	PANTHER:PTHR31744:SF3
SUPFAM:SSF101941	UniParc:UPI000294F9F7	RefSeq:XP_006365421.1	SEG:seg	:	:

Description

NAC domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028779]

Coordinates

chr6:-:50795888..50798505

Molecular Weight (calculated)

35180.9 Da

IEP (calculated)

5.739

GRAVY (calculated)

-0.835

Length

305 amino acids

Sequence
(BLAST)

001: MDEKNLPPGF RFHPSDEELI TYYLSNKVSD FSFTTRAIVD VDLNKSEPWD LPAKASMGEK EWYFFNQKDR KYPTGLRTNR ATEAGYWKTT GKDKEIFRGG
101: VELVGMKKTL VFYKGRAPKG EKTNWVMHEY RLESNLGFKP PKEEWVVSRL FHKNSSVKKS NATSSSQQSD QVESPCDTYT LAKEFAEYHH QPNFNRVPAP
201: PSIEGEIFNL QNYTNQGNMN LDALPSVNSL LFRALQFRGN YNYQQRDIDP STTIINTLDY PYNIQSQDTM GNFNLLEPPS SSLAFDSLQP QPPEQSYQLD
301: STIWE

Best Arabidopsis Sequence Match ( AT3G18400.1 )
(BLAST)

001: MEENLPPGFR FHPTDEELIT HYLCRKVSDI GFTGKAVVDV DLNKCEPWDL PAKASMGEKE WYFFSQRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYRSGV
101: LVGMKKTLVF YKGRAPKGEK SNWVMHEYRL ESKQPFNPTN KEEWVVCRVF EKSTAAKKAQ EQQPQSSQPS FGSPCDANSS MANEFEDIDE LPNLNSNSST
201: IDYNNHIHQY SQRNVYSEDN TTSTAGLNMN MNMASTNLQS WTTSLLGPPL SPINSLLLKA FQIRNSYSFP KEMIPSFNHS SLQQGVSNMI QNASSSSQVQ
301: PQPQEEAFNM DSIW

Arabidopsis Description

anac058NAC domain containing protein 58 [Source:UniProtKB/TrEMBL;Acc:Q9LS50]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.