Factsheet for PGSC0003DMT400083083

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g069710.2.1	Tomato	nucleus	96.43	95.58
PGSC0003DMT400050262	Potato	nucleus	69.64	70.48
PGSC0003DMT400003380	Potato	nucleus	52.08	54.18
VIT_14s0108g01070.t01	Wine grape	nucleus	63.39	50.59
GSMUA_Achr9P27530_001	Banana	nucleus	47.62	48.19
GSMUA_Achr6P30570_001	Banana	cytosol, nucleus, plastid	45.83	47.38
KRH40061	Soybean	nucleus	47.92	44.35
KRH18465	Soybean	nucleus	46.13	43.3
KRG93561	Soybean	nucleus	46.43	43.09
PGSC0003DMT400074048	Potato	nucleus	38.39	42.3
KRH01200	Soybean	mitochondrion, nucleus	46.73	40.46
PGSC0003DMT400013753	Potato	nucleus	39.29	39.4
PGSC0003DMT400076103	Potato	nucleus	40.77	39.37
PGSC0003DMT400032280	Potato	nucleus	31.55	36.93
PGSC0003DMT400026644	Potato	cytosol, nucleus, peroxisome	28.57	34.66
PGSC0003DMT400065559	Potato	nucleus	28.87	34.4
PGSC0003DMT400056916	Potato	nucleus	34.52	33.24
PGSC0003DMT400025690	Potato	nucleus	34.52	32.68
PGSC0003DMT400051915	Potato	cytosol	26.79	31.69
PGSC0003DMT400038464	Potato	nucleus	38.69	17.04

Protein Annotations

EntrezGene:102582995	MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	UniProt:M1D6G2	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365
EnsemblPlantsGene:PGSC0003DMG400033047	PGSC:PGSC0003DMG400033047	EnsemblPlants:PGSC0003DMT400083083	PFscan:PS51005	PANTHER:PTHR31744	PANTHER:PTHR31744:SF7
SUPFAM:SSF101941	UniParc:UPI000294BE4A	RefSeq:XP_006354772.1	:	:	:

Description

Nam 18 [Source:PGSC_GENE;Acc:PGSC0003DMG400033047]

Coordinates

chr6:-:51556780..51558723

Molecular Weight (calculated)

37851.1 Da

IEP (calculated)

8.123

GRAVY (calculated)

-0.432

Length

336 amino acids

Sequence
(BLAST)

001: MENYSGVVKD DDQMELPPGF RFHPTDEELI THYLSNKVVD TNFIAIAIGD VDLNKVEPWD LPWKAKMGEK EWYFFCVRDK KYPTGLRTNR ATAAGYWKAT
101: GKDREIYRGK SLVGMKKTLV FYKGRAPKGE KTNWVIHEFR LEGKLSLHNL PKTAKNEWVI CRVFQKSSGG KKIHISGLLK LNSNENEMGN SFQPPLTDSG
201: TASKSSHVHC FSNFLTAQNN LFPLLSNPMD SFPTTSLVPN TFSCNQIAPF TTNNLGSFGV QDPSILLRTS LDNYGLNFKK EDIFNVPQET GVISTDMNTD
301: IPSIVSNLEM KRRFLEDQVP SAGMVGLQGL DCLWSC

Best Arabidopsis Sequence Match ( AT5G61430.1 )
(BLAST)

001: METFCGFQKE EEQMDLPPGF RFHPTDEELI THYLHKKVLD TSFSAKAIGE VDLNKSEPWE LPWMAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT
101: GKDKEIYRGK SLVGMKKTLV FYRGRAPKGQ KTNWVMHEYR LEGKFSAHNL PKTAKNEWVI CRVFQKSAGG KKIPISSLIR IGSLGTDFNP SLLPSLTDSS
201: PYNDKTKTEP VYVPCFSNQT DQNQGTTLNC FSSPVLNSIQ ADIFHRIPLY QTQSLQVSMN LQSPVLTQEH SVLHAMIENN RRQSLKTMSV SQETGVSTDM
301: NTDISSDFEF GKRRFDSQED PSSSTGPVDL EPFWNY

Arabidopsis Description

NAC100NAC domain-containing protein 100 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.