Factsheet for PGSC0003DMT400003380

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400003274
PGSC0003DMT400024265
PGSC0003DMT400056255

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G29035.1	PGSC0003DMT400003274	AT2G47450.1	21798944
AT5G39610.1	PGSC0003DMT400024265	AT5G44190.1	23459204
AT5G39610.1	PGSC0003DMT400056255	AT5G44190.1	23459204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g088180.2.1	Tomato	cytosol	93.5	94.67
CDY66026	Canola	cytoskeleton, cytosol, nucleus	47.37	59.07
AT5G39610.1	Thale cress	cytosol	52.01	58.95
CDY30258	Canola	nucleus	49.23	55.02
Bra028435.1-P	Field mustard	nucleus	48.92	54.86
CDX67433	Canola	nucleus	48.92	54.86
AT3G29035.1	Thale cress	nucleus	53.87	54.72
CDX74442	Canola	nucleus	48.92	54.67
Bra025658.1-P	Field mustard	nucleus	48.92	54.67
CDY37008	Canola	nucleus	48.61	54.51
Bra036223.1-P	Field mustard	nucleus	55.11	54.27
CDX86391	Canola	cytoskeleton, cytosol, nucleus	51.7	54.05
Bra025374.1-P	Field mustard	cytoskeleton, cytosol, nucleus	51.7	54.05
CDX85242	Canola	cytosol	53.25	53.58
PGSC0003DMT400083083	Potato	cytosol	54.18	52.08
PGSC0003DMT400050262	Potato	nucleus	53.25	51.81
CDY20001	Canola	cytoskeleton, cytosol, nucleus	53.87	46.77
PGSC0003DMT400074048	Potato	nucleus	38.7	40.98
PGSC0003DMT400076103	Potato	nucleus	41.49	38.51
GSMUA_Achr7P11500_001	Banana	nucleus	39.63	37.65
PGSC0003DMT400013753	Potato	nucleus	37.15	35.82
PGSC0003DMT400025690	Potato	nucleus	37.15	33.8
PGSC0003DMT400032280	Potato	nucleus	30.03	33.8
PGSC0003DMT400026644	Potato	cytosol, nucleus, peroxisome	28.48	33.21
PGSC0003DMT400065559	Potato	nucleus	28.79	32.98
PGSC0003DMT400056916	Potato	nucleus	34.37	31.81
PGSC0003DMT400051915	Potato	cytosol	26.93	30.63
PGSC0003DMT400038464	Potato	nucleus	41.49	17.56

Protein Annotations

EntrezGene:102578811	MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	UniProt:M0ZLJ3	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365
EnsemblPlantsGene:PGSC0003DMG400001338	PGSC:PGSC0003DMG400001338	EnsemblPlants:PGSC0003DMT400003380	PFscan:PS51005	PANTHER:PTHR31744	PANTHER:PTHR31744:SF7
SUPFAM:SSF101941	UniParc:UPI000295AC97	RefSeq:XP_006338435.1	:	:	:

Description

Nam 14 [Source:PGSC_GENE;Acc:PGSC0003DMG400001338]

Coordinates

chr2:-:46075362..46076997

Molecular Weight (calculated)

36725.1 Da

IEP (calculated)

6.708

GRAVY (calculated)

-0.719

Length

323 amino acids

Sequence
(BLAST)

001: MESVCGFGGK EEEMELPPGF RFHPTDEELI THYLAPKVLD SSFCAIAIGE VDLNKVEPWD LPWKAKMGEK EWYFFCMRDK KYPTGQRTNR ATEAGYWKAT
101: GKDKEIFKSK TFVGMKKTLV FYKGRAPRGE KTNWVMHEYR LDGKYSIHNL PKTAKNECVI CRIFKKNSGG KKIAISNLTR SGSLTDNSRS SNLPPLMDMS
201: PYNNNTQITT TARSSGETCN SHVTCFSDSV EDQKPQTYDH YHAPLSSSPV SVDFPSNVPN ESMAYMENFQ YGDSGLMQDN SIMRLLIDNN YGSESKQSLR
301: GYEDHDFNIT STGPVDIDCL WNY

Best Arabidopsis Sequence Match ( AT5G61430.1 )
(BLAST)

001: METFCGFQKE EEQMDLPPGF RFHPTDEELI THYLHKKVLD TSFSAKAIGE VDLNKSEPWE LPWMAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT
101: GKDKEIYRGK SLVGMKKTLV FYRGRAPKGQ KTNWVMHEYR LEGKFSAHNL PKTAKNEWVI CRVFQKSAGG KKIPISSLIR IGSLGTDFNP SLLPSLTDSS
201: PYNDKTKTEP VYVPCFSNQT DQNQGTTLNC FSSPVLNSIQ ADIFHRIPLY QTQSLQVSMN LQSPVLTQEH SVLHAMIENN RRQSLKTMSV SQETGVSTDM
301: NTDISSDFEF GKRRFDSQED PSSSTGPVDL EPFWNY

Arabidopsis Description

NAC100NAC domain-containing protein 100 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.