Factsheet for Bra028435.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra033726.1-P
Bra036015.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39610.1	Bra033726.1-P	AT5G44190.1	23459204
AT5G39610.1	Bra036015.1-P	AT5G44190.1	23459204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67433	Canola	nucleus	100.0	100.0
AT5G39610.1	Thale cress	cytosol	84.03	84.91
Bra025658.1-P	Field mustard	nucleus	82.64	82.35
Bra025374.1-P	Field mustard	cytoskeleton, cytosol, nucleus	64.24	59.87
Bra036223.1-P	Field mustard	nucleus	67.71	59.45
Bra009246.1-P	Field mustard	nucleus	50.69	51.59
Solyc02g088180.2.1	Tomato	cytosol	55.9	50.47
Bra012960.1-P	Field mustard	nucleus	55.56	48.93
PGSC0003DMT400003380	Potato	nucleus	54.86	48.92
Bra028685.1-P	Field mustard	nucleus	52.78	48.41
Bra029313.1-P	Field mustard	nucleus	52.78	46.77
Bra001705.1-P	Field mustard	nucleus	42.01	40.47
Bra037585.1-P	Field mustard	nucleus	42.01	40.33
Bra006449.1-P	Field mustard	nucleus	46.88	40.18
Bra021592.1-P	Field mustard	nucleus	42.01	39.93
Bra001586.1-P	Field mustard	nucleus	42.71	39.81
Bra022319.1-P	Field mustard	nucleus	42.01	39.41
Bra023669.1-P	Field mustard	nucleus	45.49	38.99
Bra040153.1-P	Field mustard	nucleus	46.18	38.78
Bra002148.1-P	Field mustard	nucleus	44.79	38.39
Bra032095.1-P	Field mustard	nucleus	42.01	38.17
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	45.49	38.08
GSMUA_Achr7P11500_001	Banana	nucleus	44.79	37.94
Bra007855.1-P	Field mustard	nucleus	40.97	37.22
Bra001480.1-P	Field mustard	nucleus	35.76	37.18
Bra008259.1-P	Field mustard	cytosol	40.97	36.88
Bra034713.1-P	Field mustard	nucleus	34.72	36.36
Bra003023.1-P	Field mustard	nucleus	44.79	36.13
Bra015750.1-P	Field mustard	cytosol	41.32	35.52
Bra022685.1-P	Field mustard	nucleus	45.14	35.42
Bra030820.1-P	Field mustard	nucleus	35.07	31.46
Bra010362.1-P	Field mustard	nucleus	32.29	26.8
Bra011037.1-P	Field mustard	nucleus	31.94	26.74
Bra024194.1-P	Field mustard	nucleus	31.25	25.64

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	EnsemblPlantsGene:Bra028435	EnsemblPlants:Bra028435.1	EnsemblPlants:Bra028435.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	UniProt:M4EI20	InterPro:NAC-dom
InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31744	PANTHER:PTHR31744:SF7	SUPFAM:SSF101941
UniParc:UPI00025432A5	:	:	:	:	:

Description

AT5G39610 (E=3e-140) ATNAC2, ORE1, ANAC092, ATNAC6 | ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6); protein heterodimerization/ protein homodimerization/ transcription factor

Coordinates

chrA02:+:300439..301584

Molecular Weight (calculated)

33224.1 Da

IEP (calculated)

5.714

GRAVY (calculated)

-0.643

Length

288 amino acids

Sequence
(BLAST)

001: MDYDASRIVE MVEDEEHIDL PPGFRFHPTD EELISHYLKP KVFNTLFSAT AIGEVDLNKI EPWDLPRKAK MGEKEWYFFC VRDRKYPTGL RTNRATEAGY
101: WKATGKDKEI FKGNSLVGMK KTLVFYKGRA PKGIKTNWVM HEYRLEGISS FQNLPQTAKN EWVVCRVFQK RADGTKVDMS DLMFLDSNFN RTEPTRIPSL
201: IDCSQRDSFR GSSTHVTCFS DQETEDKRLF YHESKDGSGS LFYSDPLFLQ DNYSLMKTFL NDQETLFPGP DSTGLAAGTG ELDCFWNP

Best Arabidopsis Sequence Match ( AT5G39610.1 )
(BLAST)

001: MDYEASRIVE MVEDEEHIDL PPGFRFHPTD EELITHYLKP KVFNTFFSAT AIGEVDLNKI EPWDLPWKAK MGEKEWYFFC VRDRKYPTGL RTNRATEAGY
101: WKATGKDKEI FKGKSLVGMK KTLVFYKGRA PKGVKTNWVM HEYRLEGKYC IENLPQTAKN EWVICRVFQK RADGTKVPMS MLDPHINRME PAGLPSLMDC
201: SQRDSFTGSS SHVTCFSDQE TEDKRLVHES KDGFGSLFYS DPLFLQDNYS LMKLLLDGQE TQFSGKPFDG RDSSGTEELD CVWNF

Arabidopsis Description

NAC92NAC domain-containing protein 92 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.