Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra033726.1-P | |
| Bra036015.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G39610.1 | Bra033726.1-P | AT5G44190.1 | 23459204 |
| AT5G39610.1 | Bra036015.1-P | AT5G44190.1 | 23459204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74442 | Canola | nucleus | 100.0 | 100.0 |
| CDY30258 | Canola | nucleus | 97.92 | 97.92 |
| AT5G39610.1 | Thale cress | cytosol | 82.7 | 83.86 |
| Bra028435.1-P | Field mustard | nucleus | 82.35 | 82.64 |
| Bra036223.1-P | Field mustard | nucleus | 69.55 | 61.28 |
| Bra025374.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 64.36 | 60.19 |
| Bra009246.1-P | Field mustard | nucleus | 51.21 | 52.3 |
| Solyc02g088180.2.1 | Tomato | cytosol | 56.06 | 50.78 |
| Bra028685.1-P | Field mustard | nucleus | 53.98 | 49.68 |
| PGSC0003DMT400003380 | Potato | nucleus | 54.67 | 48.92 |
| Bra012960.1-P | Field mustard | nucleus | 53.98 | 47.71 |
| Bra029313.1-P | Field mustard | nucleus | 52.25 | 46.46 |
| Bra021592.1-P | Field mustard | nucleus | 41.87 | 39.93 |
| Bra001586.1-P | Field mustard | nucleus | 41.87 | 39.16 |
| Bra001705.1-P | Field mustard | nucleus | 40.48 | 39.13 |
| Bra006449.1-P | Field mustard | nucleus | 45.33 | 38.99 |
| Bra037585.1-P | Field mustard | nucleus | 40.14 | 38.67 |
| Bra023669.1-P | Field mustard | nucleus | 44.64 | 38.39 |
| Bra022319.1-P | Field mustard | nucleus | 40.48 | 38.11 |
| Bra040153.1-P | Field mustard | nucleus | 44.98 | 37.9 |
| Bra002148.1-P | Field mustard | nucleus | 43.94 | 37.8 |
| Bra031950.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 44.64 | 37.5 |
| GSMUA_Achr7P11500_001 | Banana | nucleus | 43.94 | 37.35 |
| Bra008259.1-P | Field mustard | cytosol | 41.18 | 37.19 |
| Bra001480.1-P | Field mustard | nucleus | 34.95 | 36.46 |
| Bra003023.1-P | Field mustard | nucleus | 44.64 | 36.13 |
| Bra032095.1-P | Field mustard | nucleus | 39.45 | 35.96 |
| Bra015750.1-P | Field mustard | cytosol | 41.52 | 35.82 |
| Bra007855.1-P | Field mustard | nucleus | 39.1 | 35.65 |
| Bra022685.1-P | Field mustard | nucleus | 44.98 | 35.42 |
| Bra034713.1-P | Field mustard | nucleus | 33.56 | 35.27 |
| Bra030820.1-P | Field mustard | nucleus | 36.33 | 32.71 |
| Bra011037.1-P | Field mustard | nucleus | 30.8 | 25.87 |
| Bra010362.1-P | Field mustard | nucleus | 30.8 | 25.65 |
| Bra024194.1-P | Field mustard | nucleus | 31.14 | 25.64 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | EnsemblPlantsGene:Bra025658 | EnsemblPlants:Bra025658.1 | EnsemblPlants:Bra025658.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003441 | InterPro:IPR036093 | UniProt:M4EA51 | InterPro:NAC-dom |
| InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31744 | PANTHER:PTHR31744:SF7 | SUPFAM:SSF101941 |
| UniParc:UPI0001B3727F | : | : | : | : | : |
Description
AT5G39610 (E=4e-137) ATNAC2, ORE1, ANAC092, ATNAC6 | ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6); protein heterodimerization/ protein homodimerization/ transcription factor
Coordinates
chrA04:-:7178279..7179508
Molecular Weight (calculated)
33071.2 Da
IEP (calculated)
6.514
GRAVY (calculated)
-0.556
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYDASRIGE IVEDEEQIDL PPGFRFHPTD EELITHYLKQ KVFNTFFSAT AIGEVDLNKI EPWELPRKAK IGEKEWYFFC VRDRKYPTGL RTNRATEAGY
101: WKATGKDKEI FKGKSLVGMK KTLVFYKGRA PKGVRTNWVM HEYRLEGIYS IQHLSQTAKN DWVICRVFHK RADGTKVDMS HLMLLDSHVN RIEPVGLPSL
201: MDSSQRDSFP GSSTHVTCFS DQETEDKRLI HLESKDGSGP LFYPDPLFLT DNDSLMKLLL NSHETQFPGT GTDPSALAGM GESGCFWNF
101: WKATGKDKEI FKGKSLVGMK KTLVFYKGRA PKGVRTNWVM HEYRLEGIYS IQHLSQTAKN DWVICRVFHK RADGTKVDMS HLMLLDSHVN RIEPVGLPSL
201: MDSSQRDSFP GSSTHVTCFS DQETEDKRLI HLESKDGSGP LFYPDPLFLT DNDSLMKLLL NSHETQFPGT GTDPSALAGM GESGCFWNF
001: MDYEASRIVE MVEDEEHIDL PPGFRFHPTD EELITHYLKP KVFNTFFSAT AIGEVDLNKI EPWDLPWKAK MGEKEWYFFC VRDRKYPTGL RTNRATEAGY
101: WKATGKDKEI FKGKSLVGMK KTLVFYKGRA PKGVKTNWVM HEYRLEGKYC IENLPQTAKN EWVICRVFQK RADGTKVPMS MLDPHINRME PAGLPSLMDC
201: SQRDSFTGSS SHVTCFSDQE TEDKRLVHES KDGFGSLFYS DPLFLQDNYS LMKLLLDGQE TQFSGKPFDG RDSSGTEELD CVWNF
101: WKATGKDKEI FKGKSLVGMK KTLVFYKGRA PKGVKTNWVM HEYRLEGKYC IENLPQTAKN EWVICRVFQK RADGTKVPMS MLDPHINRME PAGLPSLMDC
201: SQRDSFTGSS SHVTCFSDQE TEDKRLVHES KDGFGSLFYS DPLFLQDNYS LMKLLLDGQE TQFSGKPFDG RDSSGTEELD CVWNF
Arabidopsis Description
NAC92NAC domain-containing protein 92 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKA0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.