Factsheet for Bra036015.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra025658.1-P
Bra028435.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44190.1	Bra025658.1-P	AT5G39610.1	23459204
AT5G44190.1	Bra028435.1-P	AT5G39610.1	23459204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14913	Canola	nucleus	84.05	82.06
CDX96952	Canola	nucleus	76.76	77.38
AT5G44190.1	Thale cress	nucleus	67.3	64.51
Bra033726.1-P	Field mustard	nucleus	64.86	64.0
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	23.51	45.31
PGSC0003DMT400056255	Potato	nucleus	34.86	40.69
VIT_12s0028g03100.t01	Wine grape	nucleus	43.51	38.8
Bra031129.1-P	Field mustard	nucleus	43.24	38.46
KRH25644	Soybean	nucleus	44.32	38.32
KRH22338	Soybean	nucleus	45.14	38.3
KRH55898	Soybean	nucleus	44.05	38.26
GSMUA_Achr7P11040_001	Banana	nucleus	42.97	37.32
KRH26988	Soybean	nucleus	44.05	36.96
PGSC0003DMT400024265	Potato	nucleus	44.32	36.36
GSMUA_Achr10P...	Banana	nucleus	41.89	36.22
GSMUA_Achr2P15250_001	Banana	nucleus	41.08	35.85
Bra036482.1-P	Field mustard	nucleus	41.08	35.02
EER88132	Sorghum	nucleus	42.97	34.12
GSMUA_Achr6P05850_001	Banana	nucleus	40.27	33.86
Os06t0348800-01	Rice	mitochondrion, plastid	41.62	33.85
Zm00001d039260_P002	Maize	nucleus	41.62	33.41
TraesCS7A01G339800.1	Wheat	nucleus	40.81	32.75
HORVU0Hr1G007770.1	Barley	nucleus	40.54	32.68
HORVU0Hr1G010940.1	Barley	nucleus	40.54	32.68
HORVU7Hr1G083690.1	Barley	nucleus	40.54	32.68
TraesCS7D01G347500.1	Wheat	nucleus	40.27	32.53
TraesCS7B01G251400.1	Wheat	nucleus	40.27	32.46
TraesCS3A01G161000.1	Wheat	nucleus	42.97	31.24
HORVU3Hr1G032440.2	Barley	nucleus	42.7	31.23
TraesCS3D01G168200.2	Wheat	nucleus	42.43	31.21
Zm00001d044785_P001	Maize	nucleus	40.0	31.09
TraesCS3B01G191600.1	Wheat	nucleus	41.89	30.82
EES02166	Sorghum	nucleus	41.35	30.78
Solyc07g053630.2.1	Tomato	golgi, mitochondrion, nucleus, plastid	44.32	30.2
Bra013279.1-P	Field mustard	nucleus	24.32	30.1
Os01t0239000-02	Rice	nucleus	42.97	29.5
HORVU3Hr1G032410.2	Barley	nucleus	10.81	19.14
Bra013278.1-P	Field mustard	nucleus	25.95	19.09
Bra013277.1-P	Field mustard	nucleus	25.95	19.09
Bra012623.1-P	Field mustard	nucleus	25.68	18.52

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	EnsemblPlantsGene:Bra036015	EnsemblPlants:Bra036015.1	EnsemblPlants:Bra036015.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4F4L5	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31312	PANTHER:PTHR31312:SF1	InterPro:SANT/Myb
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000253E678	SEG:seg	:	:

Description

AT5G44190 (E=3e-146) GLK2, ATGLK2, GPRI2 | GLK2 (GOLDEN2-LIKE 2); DNA binding / transcription factor/ transcription regulator

Coordinates

chrScaffold000111:+:579179..581774

Molecular Weight (calculated)

40994.3 Da

IEP (calculated)

7.064

GRAVY (calculated)

-0.672

Length

370 amino acids

Sequence
(BLAST)

001: MAADFSDFTT ERLPDFTMVG EGSLDLLGGI DYYDDFFIGF DGDDALPDLE IDCDILGEYS GSGRDDEQEM EGNSSTASET SERDGGVVKL DGGDSTHKMV
101: RRGKRKGKKN KDCLSVDNEI KKKPKVDWTP ELHRNFVQAV EQLGIDKAVP SRILEIMNVK SLTRHNVASH LQKYRSHRKH LLAREAEAAS WNLRRHATVA
201: VAGLGGKKPW MAPALGYTPN VTQMHHGHFR PLHVWGHPTW PKHKHNHPSS STHRTYQIPA VAAPPSSWPG QPPYWHQQAL YPQGYGMATP NHSMYNNKSE
301: TSIGVPTRQL SPTTNPPIDI HPSNESIDAA IGDVITKPWL PLPLGLKPPS VDGVMTELQR QGVPNVPPLP

Best Arabidopsis Sequence Match ( AT5G44190.1 )
(BLAST)

001: MLTVSPAPVL IGNNSKDTYM AADFADFTTE DLPDFTTVGD FSDDLLDGID YYDDLFIGFD GDDVLPDLEI DSEILGEYSG SGRDEEQEME GNTSTASETS
101: ERDVGVCKQE GGGGGDGGFR DKTVRRGKRK GKKSKDCLSD ENDIKKKPKV DWTPELHRKF VQAVEQLGVD KAVPSRILEI MNVKSLTRHN VASHLQKYRS
201: HRKHLLAREA EAASWNLRRH ATVAVPGVGG GGKKPWTAPA LGYPPHVAPM HHGHFRPLHV WGHPTWPKHK PNTPASAHRT YPMPAIAAAP ASWPGHPPYW
301: HQQPLYPQGY GMASSNHSSI GVPTRQLGPT NPPIDIHPSN ESIDAAIGDV ISKPWLPLPL GLKPPSVDGV MTELQRQGVS NVPPLP

Arabidopsis Description

GLK2Transcription activator GLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.