CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044785_P001	Maize	nucleus	65.24	63.87
Os06t0348800-01	Rice	mitochondrion, plastid	61.16	62.64
TraesCS7A01G339800.1	Wheat	nucleus	56.65	57.27
TraesCS7D01G347500.1	Wheat	nucleus	56.22	57.21
HORVU7Hr1G083690.1	Barley	nucleus	55.15	55.99
HORVU0Hr1G010940.1	Barley	nucleus	55.15	55.99
HORVU0Hr1G007770.1	Barley	nucleus	55.15	55.99
TraesCS7B01G251400.1	Wheat	nucleus	54.51	55.34
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	21.89	53.12
GSMUA_Achr10P...	Banana	nucleus	45.71	49.77
GSMUA_Achr7P11040_001	Banana	nucleus	45.28	49.53
GSMUA_Achr2P15250_001	Banana	nucleus	42.92	47.17
PGSC0003DMT400056255	Potato	nucleus	31.12	45.74
VIT_12s0028g03100.t01	Wine grape	nucleus	38.63	43.37
Bra036015.1-P	Field mustard	nucleus	34.12	42.97
PGSC0003DMT400024265	Potato	nucleus	40.77	42.13
GSMUA_Achr6P05850_001	Banana	nucleus	39.27	41.59
CDY14913	Canola	nucleus	33.69	41.42
KRH25644	Soybean	nucleus	37.98	41.36
KRH22338	Soybean	nucleus	38.63	41.28
EES02166	Sorghum	nucleus	43.56	40.85
KRH26988	Soybean	nucleus	38.41	40.59
AT5G44190.1	Thale cress	nucleus	33.48	40.41
KRH55898	Soybean	nucleus	36.91	40.38
CDX96952	Canola	nucleus	31.33	39.78
Bra031129.1-P	Field mustard	nucleus	35.41	39.66
AT2G20570.2	Thale cress	nucleus	36.7	39.22
CDX94762	Canola	nucleus	30.9	38.4
CDY22303	Canola	nucleus	30.47	37.87
Bra036482.1-P	Field mustard	nucleus	35.19	37.79
CDY05773	Canola	nucleus	36.05	37.67
Bra033726.1-P	Field mustard	nucleus	30.04	37.33
CDY31954	Canola	nucleus	34.98	36.22
Solyc07g053630.2.1	Tomato	golgi, mitochondrion, nucleus, plastid	40.99	35.17
CDX81968	Canola	nucleus	35.62	16.26

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	EntrezGene:8057890	UniProt:C5Z7F7	EnsemblPlants:EER88132	ProteinID:EER88132
ProteinID:EER88132.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010638	GO:GO:0016043
GO:GO:0045893	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR31312	PANTHER:PTHR31312:SF3	InterPro:SANT/Myb	EnsemblPlantsGene:SORBI_3010G096300	SUPFAM:SSF46689
unigene:Sbi.8118	TIGRFAMs:TIGR01557	UniParc:UPI0001A893E2	RefSeq:XP_002436765.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:+:8684708..8687447

Molecular Weight (calculated)

50074.1 Da

IEP (calculated)

4.828

GRAVY (calculated)

-0.438

Length

466 amino acids

Sequence
(BLAST)

001: MCADVEECGG AAAGIKEMEE IAVGPVSDLD FDFTVDDIDF GDFFLRLDDD DRDALPDLEV DPAEIFITDF EAIATGAGHG GVMDQEVPSV LPLADAVHIG
101: AVDVDVDPCC PGVLGGEEDN VTTCEDVEEG KGECNDDHAE GEEVVAGNGD SGEGGCGTVL GEKSPSSTTS QEAESRHKSS NKHSHGKKKA KVDWTPDLHR
201: RFVQAVEQLG IDKAVPSRIL EIMGIDSLTR HNIASHLQKY RSHRKHMLAR EVEAATWTHR RQMYAAGGAP NGVKRPDSNA WTVPTIGFPP PPPPPPPPPP
301: PSPHPMQHFG RPLHVWGHPT PTVESPRVPM WPRHLVPRTP PPPWAPPPPS DPAFWHHAYM RGPAHMPGQV TPCVAVPMPA ARFPAPPVRG ALPCPPPMYR
401: PLVPPTLDTQ FQLQTQPSSE SIDAAIGDVL TKPWLPLPLG LKPPSVDSVM GELQRQGVAN VPPACG

Best Arabidopsis Sequence Match ( AT2G20570.1 )
(BLAST)

001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKVDWTP ELHRRFVEAV EQLGVDKAVP SRILELMGVH CLTRHNVASH
201: LQKYRSHRKH LLAREAEAAN WTRKRHIYGV DTGANLNGRT KNGWLAPAPT LGFPPPPPVA VAPPPVHHHH FRPLHVWGHP TVDQSIMPHV WPKHLPPPST
301: AMPNPPFWVS DSPYWHPMHN GTTPYLPTVA TRFRAPPVAG IPHALPPHHT MYKPNLGFGG ARPPVDLHPS KESVDAAIGD VLTRPWLPLP LGLNPPAVDG
401: VMTELHRHGV SEVPPTASCA

Arabidopsis Description

GPRI1GBF's pro-rich region-interacting factor 1 [Source:UniProtKB/TrEMBL;Acc:F4IVF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.