Factsheet for GSMUA_Achr2P15250_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P11500_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44190.1	GSMUA_Achr7P11500_001	AT5G39610.1	23459204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P11040_001	Banana	nucleus	63.68	63.38
GSMUA_Achr10P...	Banana	nucleus	60.38	59.81
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	24.29	53.65
PGSC0003DMT400056255	Potato	nucleus	37.74	50.47
GSMUA_Achr6P05850_001	Banana	nucleus	52.36	50.45
VIT_12s0028g03100.t01	Wine grape	nucleus	49.29	50.36
KRH26988	Soybean	nucleus	50.71	48.75
KRH22338	Soybean	nucleus	50.0	48.62
KRH25644	Soybean	nucleus	48.35	47.9
KRH55898	Soybean	nucleus	47.88	47.65
Os06t0348800-01	Rice	mitochondrion, plastid	49.76	46.37
HORVU0Hr1G007770.1	Barley	nucleus	48.82	45.1
HORVU0Hr1G010940.1	Barley	nucleus	48.82	45.1
HORVU7Hr1G083690.1	Barley	nucleus	48.82	45.1
Zm00001d044785_P001	Maize	nucleus	50.47	44.96
PGSC0003DMT400024265	Potato	nucleus	47.64	44.79
TraesCS7D01G347500.1	Wheat	nucleus	48.11	44.54
TraesCS7A01G339800.1	Wheat	nucleus	48.11	44.25
TraesCS7B01G251400.1	Wheat	nucleus	47.88	44.23
EER88132	Sorghum	nucleus	47.17	42.92
AT5G44190.1	Thale cress	nucleus	38.21	41.97
CDY14913	Canola	nucleus	37.26	41.69
Bra036015.1-P	Field mustard	nucleus	35.85	41.08
Bra031129.1-P	Field mustard	nucleus	40.09	40.87
EES02166	Sorghum	nucleus	47.88	40.85
AT2G20570.2	Thale cress	nucleus	41.75	40.6
Zm00001d039260_P002	Maize	nucleus	43.87	40.35
CDX96952	Canola	nucleus	34.91	40.33
TraesCS3D01G168200.2	Wheat	nucleus	46.23	38.97
CDX94762	Canola	nucleus	34.43	38.93
CDY22303	Canola	nucleus	34.43	38.93
Os01t0239000-02	Rice	nucleus	49.29	38.78
CDY05773	Canola	nucleus	40.57	38.56
TraesCS3A01G161000.1	Wheat	nucleus	46.23	38.51
Bra036482.1-P	Field mustard	nucleus	39.39	38.48
Bra033726.1-P	Field mustard	nucleus	33.96	38.4
TraesCS3B01G191600.1	Wheat	nucleus	44.81	37.77
HORVU3Hr1G032440.2	Barley	nucleus	44.81	37.55
CDY31954	Canola	nucleus	39.15	36.89
Solyc07g053630.2.1	Tomato	golgi, mitochondrion, nucleus, plastid	47.17	36.83
GSMUA_Achr11P...	Banana	nucleus	26.18	23.03
HORVU3Hr1G032410.2	Barley	nucleus	10.38	21.05
GSMUA_Achr2P18200_001	Banana	nucleus	24.76	18.95
CDX81968	Canola	nucleus	40.33	16.75

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr2G15250_001
EnsemblPlants:GSMUA_Achr2P15250_001	EnsemblPlants:GSMUA_Achr2T15250_001	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M0S866	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31312	PANTHER:PTHR31312:SF3	InterPro:SANT/Myb
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000294F4F0	SEG:seg	:	:

Description

Putative Two-component response regulator-like APRR2 [Source:GMGC_GENE;Acc:GSMUA_Achr2G15250_001]

Coordinates

chr2:+:16615556..16618051

Molecular Weight (calculated)

45713.1 Da

IEP (calculated)

5.715

GRAVY (calculated)

-0.418

Length

424 amino acids

Sequence
(BLAST)

001: MLAVEALRGS NGEERDGSSD NFCINGDFTG ETLLEDINFS DLFAGIDDGD MLPGLELDPA ETFAEFSVGW EEDSGSPAVA EATDGMLGGV TQDTVVLDGE
101: KYLSHGEEAT SETTAEDAAS MPSEARSSTP DNGQKSSVAA AAAAKGSQGK RKAKVDWTPD LHRRFVQAVE QLGIDKAVPS RILELMGIDC LTRHNVASHL
201: QKYRSHRKHV LAREAEAASW SQRRQMYATG MGVKRVDVNP WLASTIGFLP PPPPPPPPPV QPFRPLHVWG HPTPEAPVLH MWPRHLSARS PTQPWAPPQP
301: PLPPPPDPSY WHHLYQSGSG EGWVPHTMAK GAPCFPQPLP MVRFAAPPVP GVVPRPMYRA VAPAMTKHPS SQLQLDASPS KESIDAAIGD VLGKPWLPLP
401: LGLKPPSLDG VLVELQRQGV SKVP

Best Arabidopsis Sequence Match ( AT2G20570.1 )
(BLAST)

001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKVDWTP ELHRRFVEAV EQLGVDKAVP SRILELMGVH CLTRHNVASH
201: LQKYRSHRKH LLAREAEAAN WTRKRHIYGV DTGANLNGRT KNGWLAPAPT LGFPPPPPVA VAPPPVHHHH FRPLHVWGHP TVDQSIMPHV WPKHLPPPST
301: AMPNPPFWVS DSPYWHPMHN GTTPYLPTVA TRFRAPPVAG IPHALPPHHT MYKPNLGFGG ARPPVDLHPS KESVDAAIGD VLTRPWLPLP LGLNPPAVDG
401: VMTELHRHGV SEVPPTASCA

Arabidopsis Description

GPRI1GBF's pro-rich region-interacting factor 1 [Source:UniProtKB/TrEMBL;Acc:F4IVF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.