Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 3
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g088180.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G44190.1 | Solyc02g088180.2.1 | AT5G39610.1 | 23459204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400056255 | Potato | nucleus | 80.21 | 48.58 |
| VIT_12s0028g03100.t01 | Wine grape | nucleus | 59.9 | 27.71 |
| KRH22338 | Soybean | nucleus | 57.81 | 25.46 |
| KRH55898 | Soybean | nucleus | 55.73 | 25.12 |
| KRH26988 | Soybean | nucleus | 57.29 | 24.94 |
| KRH25644 | Soybean | nucleus | 54.17 | 24.3 |
| GSMUA_Achr2P15250_001 | Banana | nucleus | 53.65 | 24.29 |
| GSMUA_Achr7P11040_001 | Banana | nucleus | 53.65 | 24.18 |
| GSMUA_Achr10P... | Banana | nucleus | 53.65 | 24.07 |
| Bra036015.1-P | Field mustard | nucleus | 45.31 | 23.51 |
| GSMUA_Achr6P05850_001 | Banana | nucleus | 52.6 | 22.95 |
| AT5G44190.1 | Thale cress | nucleus | 45.31 | 22.54 |
| CDY14913 | Canola | nucleus | 44.27 | 22.43 |
| CDX96952 | Canola | nucleus | 42.71 | 22.34 |
| Solyc07g053630.2.1 | Tomato | golgi, mitochondrion, nucleus, plastid | 63.02 | 22.28 |
| Os06t0348800-01 | Rice | mitochondrion, plastid | 52.08 | 21.98 |
| EER88132 | Sorghum | nucleus | 53.12 | 21.89 |
| TraesCS7B01G251400.1 | Wheat | nucleus | 51.56 | 21.57 |
| TraesCS7A01G339800.1 | Wheat | nucleus | 51.04 | 21.26 |
| TraesCS7D01G347500.1 | Wheat | nucleus | 50.52 | 21.18 |
| Bra031129.1-P | Field mustard | nucleus | 45.83 | 21.15 |
| HORVU0Hr1G007770.1 | Barley | nucleus | 50.52 | 21.13 |
| HORVU0Hr1G010940.1 | Barley | nucleus | 50.52 | 21.13 |
| HORVU7Hr1G083690.1 | Barley | nucleus | 50.52 | 21.13 |
| CDY22303 | Canola | nucleus | 40.62 | 20.8 |
| AT2G20570.2 | Thale cress | nucleus | 46.88 | 20.64 |
| Zm00001d044785_P001 | Maize | nucleus | 51.04 | 20.59 |
| CDX94762 | Canola | nucleus | 40.1 | 20.53 |
| Bra033726.1-P | Field mustard | nucleus | 40.1 | 20.53 |
| Bra036482.1-P | Field mustard | nucleus | 45.31 | 20.05 |
| Zm00001d039260_P002 | Maize | nucleus | 46.35 | 19.31 |
| CDY05773 | Canola | nucleus | 44.79 | 19.28 |
| CDY31954 | Canola | nucleus | 44.79 | 19.11 |
| TraesCS3D01G168200.2 | Wheat | nucleus | 49.48 | 18.89 |
| HORVU3Hr1G032440.2 | Barley | nucleus | 49.48 | 18.77 |
| EES02166 | Sorghum | nucleus | 48.44 | 18.71 |
| TraesCS3A01G161000.1 | Wheat | nucleus | 49.48 | 18.66 |
| TraesCS3B01G191600.1 | Wheat | nucleus | 47.92 | 18.29 |
| Os01t0239000-02 | Rice | nucleus | 50.52 | 18.0 |
| Solyc08g077230.2.1 | Tomato | nucleus | 31.25 | 10.71 |
| Solyc06g061030.2.1 | Tomato | nucleus | 29.17 | 10.02 |
| CDX81968 | Canola | nucleus | 45.31 | 8.52 |
| HORVU3Hr1G032410.2 | Barley | nucleus | 5.73 | 5.26 |
Protein Annotations
| EnsemblPlants:Solyc10g008160.2.1 | EnsemblPlantsGene:Solyc10g008160.2 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| PANTHER:PTHR31312 | PANTHER:PTHR31312:SF1 | UniParc:UPI000276B7A3 | UniProt:K4CXZ3 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr10:+:2293088..2295945
Molecular Weight (calculated)
20938.4 Da
IEP (calculated)
10.687
GRAVY (calculated)
-0.295
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MATHGLTRHN IASHLQKYRA HRKHLLAREA EAASLNHRKQ MYSGATTIGG GGKRILMNPW PAPPTMGFPP MAHHVRPLHV WGHPHVNNSF WHPHYQRVSN
101: SLVPGTPCFS APITSARFAA PLMVPGIPPS PAIIKVDTVA SDLHPSNESI DAAIEDVLSK PQLPLPIGLK PPSIDSVLNE LQRQGITKIP PT
101: SLVPGTPCFS APITSARFAA PLMVPGIPPS PAIIKVDTVA SDLHPSNESI DAAIEDVLSK PQLPLPIGLK PPSIDSVLNE LQRQGITKIP PT
001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKTRLNE QVYNGFVFFL KVDWTPELHR RFVEAVEQLG VDKAVPSRIL
201: ELMGVHCLTR HNVASHLQKY RSHRKHLLAR EAEAANWTRK RHIYGVDTGA NLNGRTKNGW LAPAPTLGFP PPPPVAVAPP PVHHHHFRPL HVWGHPTVDQ
301: SIMPHVWPKH LPPPSTAMPN PPFWVSDSPY WHPMHNGTTP YLPTVATRFR APPVAGIPHA LPPHHTMYKP NLGFGGARPP VDLHPSKESV DAAIGDVLTR
401: PWLPLPLGLN PPAVDGVMTE LHRHGVSEVP PTASCA
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKTRLNE QVYNGFVFFL KVDWTPELHR RFVEAVEQLG VDKAVPSRIL
201: ELMGVHCLTR HNVASHLQKY RSHRKHLLAR EAEAANWTRK RHIYGVDTGA NLNGRTKNGW LAPAPTLGFP PPPPVAVAPP PVHHHHFRPL HVWGHPTVDQ
301: SIMPHVWPKH LPPPSTAMPN PPFWVSDSPY WHPMHNGTTP YLPTVATRFR APPVAGIPHA LPPHHTMYKP NLGFGGARPP VDLHPSKESV DAAIGDVLTR
401: PWLPLPLGLN PPAVDGVMTE LHRHGVSEVP PTASCA
Arabidopsis Description
GPRI1GBF's pro-rich region-interacting factor 1 [Source:UniProtKB/TrEMBL;Acc:F4IVF9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.