Factsheet for GSMUA_Achr6P05850_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P11500_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44190.1	GSMUA_Achr7P11500_001	AT5G39610.1	23459204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P11040_001	Banana	nucleus	54.32	56.1
GSMUA_Achr10P...	Banana	nucleus	52.73	54.21
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	22.95	52.6
GSMUA_Achr2P15250_001	Banana	nucleus	50.45	52.36
PGSC0003DMT400056255	Potato	nucleus	34.32	47.63
Os06t0348800-01	Rice	mitochondrion, plastid	46.14	44.62
VIT_12s0028g03100.t01	Wine grape	nucleus	41.82	44.34
KRH22338	Soybean	nucleus	43.18	43.58
KRH25644	Soybean	nucleus	42.05	43.22
KRH26988	Soybean	nucleus	42.05	41.95
KRH55898	Soybean	nucleus	40.23	41.55
HORVU0Hr1G007770.1	Barley	nucleus	42.95	41.18
HORVU0Hr1G010940.1	Barley	nucleus	42.95	41.18
HORVU7Hr1G083690.1	Barley	nucleus	42.95	41.18
PGSC0003DMT400024265	Potato	nucleus	42.05	41.02
TraesCS7A01G339800.1	Wheat	nucleus	42.95	41.0
Bra036015.1-P	Field mustard	nucleus	33.86	40.27
TraesCS7D01G347500.1	Wheat	nucleus	41.82	40.17
Zm00001d044785_P001	Maize	nucleus	43.41	40.13
Zm00001d039260_P002	Maize	nucleus	41.82	39.91
AT5G44190.1	Thale cress	nucleus	35.0	39.9
CDY14913	Canola	nucleus	34.32	39.84
TraesCS7B01G251400.1	Wheat	nucleus	41.36	39.65
EER88132	Sorghum	nucleus	41.59	39.27
CDX96952	Canola	nucleus	32.27	38.69
EES02166	Sorghum	nucleus	43.41	38.43
HORVU3Hr1G032440.2	Barley	nucleus	43.18	37.55
AT2G20570.2	Thale cress	nucleus	37.05	37.39
TraesCS3D01G168200.2	Wheat	nucleus	42.73	37.38
CDY22303	Canola	nucleus	31.82	37.33
CDX94762	Canola	nucleus	31.82	37.33
TraesCS3A01G161000.1	Wheat	nucleus	43.18	37.33
TraesCS3B01G191600.1	Wheat	nucleus	42.5	37.18
Bra036482.1-P	Field mustard	nucleus	36.59	37.1
Bra033726.1-P	Field mustard	nucleus	31.59	37.07
Bra031129.1-P	Field mustard	nucleus	34.77	36.78
CDY05773	Canola	nucleus	37.05	36.55
Os01t0239000-02	Rice	nucleus	44.32	36.18
CDY31954	Canola	nucleus	36.36	35.56
Solyc07g053630.2.1	Tomato	golgi, mitochondrion, nucleus, plastid	41.36	33.52
GSMUA_Achr11P...	Banana	nucleus	25.45	23.24
GSMUA_Achr2P18200_001	Banana	nucleus	22.95	18.23
HORVU3Hr1G032410.2	Barley	nucleus	8.64	18.18
CDX81968	Canola	nucleus	34.55	14.89

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G05850_001
EnsemblPlants:GSMUA_Achr6P05850_001	EnsemblPlants:GSMUA_Achr6T05850_001	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M0T4I3	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31312	PANTHER:PTHR31312:SF1	InterPro:SANT/Myb
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0002965C73	SEG:seg	:	:

Description

Putative myb-like DNA-binding domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G05850_001]

Coordinates

chr6:-:3938413..3940909

Molecular Weight (calculated)

47571.9 Da

IEP (calculated)

6.398

GRAVY (calculated)

-0.267

Length

440 amino acids

Sequence
(BLAST)

001: MLAVEPLRGS NGDEREGAMG SLAVVDDFVD GSLFEDISFS DLFVGMDDGD VLPDLELDPA EILVEFSGAA EGLFRVDGAT QDVVEEAEER NASHGVAVAS
101: GMAEEDPILV TATEVWSASP EGDRGRKSSA AAVSMKGSQG KRKAKVSIAL VTLAAILGKE SRAKNRERER EVGSYLLAVL SLYGCSQKVE WTPELHRRFV
201: QAVEQLGIDK AVPSRILELM GIDCLTRHNI ASHLQKYRSH RKSLLTRQAE AASWSQRRQM YAAGTGAKRG ANPWLAPTVV LPPPPAQAFR PLHVWGHPAA
301: AEPPLVHMWP FPPPPDPPYW HHHFQRGSRE GWVAMTQGTP CLPQPMAAAG FAAPHLAGIV PHPMYRPVPP PPPMSKQQES TSQLQLDAAH PTKECIDAAI
401: GDVLAKPWLP LPLRLKPPSL DSVLAELQKQ GVSKVPPASG

Best Arabidopsis Sequence Match ( AT2G20570.2 )
(BLAST)

001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKTRLNE QVYNGFVFFL KVDWTPELHR RFVEAVEQLG VDKAVPSRIL
201: ELMGVHCLTR HNVASHLQKY RSHRKHLLAR EAEAANWTRK RHIYGVDTGA NLNGRTKNGW LAPAPTLGFP PPPPVAVAPP PVHHHHFRPL HVWGHPTVDQ
301: SIMPHVWPKH LPPPSTAMPN PPFWVSDSPY WHPMHNGTTP YLPTVATRFR APPVAGIPHA LPPHHTMYKP NLGFGGARPP VDLHPSKESV DAAIGDVLTR
401: PWLPLPLGLN PPAVDGVMTE LHRHGVSEVP PTASCA

Arabidopsis Description

GPRI1GBF's pro-rich region-interacting factor 1 [Source:UniProtKB/TrEMBL;Acc:F4IVF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.