CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67433
CDX74442
CDY30258
CDY37008

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44190.1	CDX67433	AT5G39610.1	23459204
AT5G44190.1	CDX74442	AT5G39610.1	23459204
AT5G44190.1	CDY30258	AT5G39610.1	23459204
AT5G44190.1	CDY37008	AT5G39610.1	23459204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033726.1-P	Field mustard	nucleus	98.93	98.93
CDX94762	Canola	nucleus	87.47	87.47
AT5G44190.1	Thale cress	nucleus	70.13	68.13
CDY14913	Canola	nucleus	68.27	67.55
CDX96952	Canola	nucleus	65.6	67.03
PGSC0003DMT400056255	Potato	nucleus	34.93	41.32
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	20.8	40.62
KRH22338	Soybean	nucleus	44.53	38.3
KRH55898	Soybean	nucleus	42.93	37.79
KRH26988	Soybean	nucleus	44.27	37.64
KRH25644	Soybean	nucleus	42.93	37.62
VIT_12s0028g03100.t01	Wine grape	nucleus	40.53	36.63
GSMUA_Achr7P11040_001	Banana	nucleus	40.53	35.68
CDY05773	Canola	nucleus	42.13	35.43
PGSC0003DMT400024265	Potato	nucleus	42.13	35.03
CDY31954	Canola	nucleus	41.6	34.67
GSMUA_Achr2P15250_001	Banana	nucleus	38.93	34.43
GSMUA_Achr10P...	Banana	nucleus	36.8	32.24
GSMUA_Achr6P05850_001	Banana	nucleus	37.33	31.82
Os06t0348800-01	Rice	mitochondrion, plastid	38.4	31.65
EER88132	Sorghum	nucleus	37.87	30.47
Zm00001d039260_P002	Maize	nucleus	37.33	30.37
TraesCS7A01G339800.1	Wheat	nucleus	37.07	30.15
HORVU0Hr1G007770.1	Barley	nucleus	36.8	30.07
HORVU0Hr1G010940.1	Barley	nucleus	36.8	30.07
HORVU7Hr1G083690.1	Barley	nucleus	36.8	30.07
TraesCS7B01G251400.1	Wheat	nucleus	36.8	30.07
TraesCS7D01G347500.1	Wheat	nucleus	36.53	29.91
HORVU3Hr1G032440.2	Barley	nucleus	40.27	29.84
TraesCS3D01G168200.2	Wheat	nucleus	39.47	29.42
Zm00001d044785_P001	Maize	nucleus	37.33	29.41
TraesCS3A01G161000.1	Wheat	nucleus	39.73	29.27
TraesCS3B01G191600.1	Wheat	nucleus	38.93	29.03
Solyc07g053630.2.1	Tomato	golgi, mitochondrion, nucleus, plastid	41.87	28.91
Os01t0239000-02	Rice	nucleus	40.8	28.39
EES02166	Sorghum	nucleus	37.33	28.17
CDX78822	Canola	nucleus	28.0	20.83
CDY01512	Canola	nucleus	28.27	20.42
CDY44493	Canola	nucleus	26.4	19.96
CDX90427	Canola	nucleus	27.47	19.81
HORVU3Hr1G032410.2	Barley	nucleus	10.67	19.14
CDX81968	Canola	nucleus	41.6	15.28

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:A0A078GC87	UniProt:A0A078GC87	EnsemblPlants:CDY22303	ProteinID:CDY22303
ProteinID:CDY22303.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00018769001	InterPro:Homeobox-like_sf
InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31312
PANTHER:PTHR31312:SF1	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0004EE3BB8	SEG:seg

Description

BnaA06g36250DBnaA06g36250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GC87]

Coordinates

chrLK032130:-:16244..18633

Molecular Weight (calculated)

41365.9 Da

IEP (calculated)

6.408

GRAVY (calculated)

-0.570

Length

375 amino acids

Sequence
(BLAST)

001: MLTVSPLVVN TTPRDHYMAA DFADFTAEGL PDFTAEEGSL DVLEGIDFYD DLFIEFNGDD VLPDLEIDSD VLGEYSGSGR DEEQEMEGNT SAASETSERD
101: GGWCKPEGTD KTVRKGKRKG KKTKDCLSND NGIKKKPKVD WTPELHRKFV EAVERLGVDK AVPSRILEIM NVKSLNRHNV ASHLQKYRSH RKHLLAREAE
201: AASWNLRRHT TVAVPEGGEK LSMALPALGY PPHVTPLHQG HFRPLHVWGH PTWPKHKPNN PSSSPLRTFP IPPAVAVAPS CWPGQLPYWH LQTLYPQGYG
301: MASSNHSSIG VPTRQLGPTN PPIDIHPSNE SIDAALGDVI TKPWLPLPLG LNPPSVDGVM TELQRQGISN VPPLP

Best Arabidopsis Sequence Match ( AT5G44190.1 )
(BLAST)

001: MLTVSPAPVL IGNNSKDTYM AADFADFTTE DLPDFTTVGD FSDDLLDGID YYDDLFIGFD GDDVLPDLEI DSEILGEYSG SGRDEEQEME GNTSTASETS
101: ERDVGVCKQE GGGGGDGGFR DKTVRRGKRK GKKSKDCLSD ENDIKKKPKV DWTPELHRKF VQAVEQLGVD KAVPSRILEI MNVKSLTRHN VASHLQKYRS
201: HRKHLLAREA EAASWNLRRH ATVAVPGVGG GGKKPWTAPA LGYPPHVAPM HHGHFRPLHV WGHPTWPKHK PNTPASAHRT YPMPAIAAAP ASWPGHPPYW
301: HQQPLYPQGY GMASSNHSSI GVPTRQLGPT NPPIDIHPSN ESIDAAIGDV ISKPWLPLPL GLKPPSVDGV MTELQRQGVS NVPPLP

Arabidopsis Description

GLK2Transcription activator GLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.