Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036482.1-P | Field mustard | nucleus | 89.24 | 91.71 |
| CDY31954 | Canola | nucleus | 91.48 | 90.67 |
| AT2G20570.2 | Thale cress | nucleus | 69.73 | 71.33 |
| VIT_12s0028g03100.t01 | Wine grape | nucleus | 43.5 | 46.75 |
| PGSC0003DMT400056255 | Potato | nucleus | 32.06 | 45.11 |
| Solyc10g008160.2.1 | Tomato | mitochondrion, nucleus | 19.28 | 44.79 |
| KRH22338 | Soybean | nucleus | 43.72 | 44.72 |
| KRH26988 | Soybean | nucleus | 42.83 | 43.31 |
| GSMUA_Achr7P11040_001 | Banana | nucleus | 41.26 | 43.19 |
| GSMUA_Achr10P... | Banana | nucleus | 41.26 | 42.99 |
| KRH25644 | Soybean | nucleus | 41.03 | 42.76 |
| KRH55898 | Soybean | nucleus | 40.81 | 42.72 |
| PGSC0003DMT400024265 | Potato | nucleus | 43.05 | 42.57 |
| CDY22303 | Canola | nucleus | 35.43 | 42.13 |
| CDY14913 | Canola | nucleus | 35.43 | 41.69 |
| GSMUA_Achr2P15250_001 | Banana | nucleus | 38.56 | 40.57 |
| CDX94762 | Canola | nucleus | 34.08 | 40.53 |
| CDX96952 | Canola | nucleus | 32.74 | 39.78 |
| Os06t0348800-01 | Rice | mitochondrion, plastid | 38.79 | 38.02 |
| Zm00001d039260_P002 | Maize | nucleus | 38.34 | 37.09 |
| GSMUA_Achr6P05850_001 | Banana | nucleus | 36.55 | 37.05 |
| TraesCS7D01G347500.1 | Wheat | nucleus | 37.22 | 36.24 |
| EER88132 | Sorghum | nucleus | 37.67 | 36.05 |
| TraesCS7A01G339800.1 | Wheat | nucleus | 37.0 | 35.79 |
| HORVU7Hr1G083690.1 | Barley | nucleus | 36.77 | 35.73 |
| HORVU0Hr1G010940.1 | Barley | nucleus | 36.77 | 35.73 |
| HORVU0Hr1G007770.1 | Barley | nucleus | 36.77 | 35.73 |
| TraesCS7B01G251400.1 | Wheat | nucleus | 36.55 | 35.51 |
| Solyc07g053630.2.1 | Tomato | golgi, mitochondrion, nucleus, plastid | 42.6 | 34.99 |
| HORVU3Hr1G032440.2 | Barley | nucleus | 39.69 | 34.98 |
| TraesCS3D01G168200.2 | Wheat | nucleus | 39.24 | 34.79 |
| TraesCS3B01G191600.1 | Wheat | nucleus | 39.01 | 34.59 |
| EES02166 | Sorghum | nucleus | 38.34 | 34.41 |
| TraesCS3A01G161000.1 | Wheat | nucleus | 39.24 | 34.38 |
| Zm00001d044785_P001 | Maize | nucleus | 36.32 | 34.03 |
| Os01t0239000-02 | Rice | nucleus | 40.36 | 33.4 |
| CDX81968 | Canola | nucleus | 65.92 | 28.8 |
| CDY01512 | Canola | nucleus | 24.89 | 21.39 |
| CDY44493 | Canola | nucleus | 23.77 | 21.37 |
| CDX78822 | Canola | nucleus | 23.99 | 21.23 |
| CDX90427 | Canola | nucleus | 24.22 | 20.77 |
| HORVU3Hr1G032410.2 | Barley | nucleus | 8.52 | 18.18 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078F1P6 | EnsemblPlants:CDY05773 | ProteinID:CDY05773 | ProteinID:CDY05773.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00120845001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31312 |
| PANTHER:PTHR31312:SF1 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EF3A7A | SEG:seg |
Description
BnaC07g00300D
Coordinates
chrLK031964:+:802907..805620
Molecular Weight (calculated)
48984.9 Da
IEP (calculated)
7.516
GRAVY (calculated)
-0.542
Length
446 amino acids
Sequence
(BLAST)
(BLAST)
001: MLALSPARNS TRDDGESEFL ATSCGFSINP EEDFPEFAVH GDLLDIIDFD DLFGVAGDVL PDLEMDPEIL GGELSDHMNA SSTITTTTSS SEKTKSQGKA
101: NNKKGISGKG EEVVSKRDHN ETPVAETVVN YDGDSGRKRS HSSSGSTKRN PISNNEGKRK VKNHIENKII MFITPFYKVD WTPELHRRFV EAVEQLGLEK
201: AVPSRILELM GVHCLTRHNV ASHLQKYRSH RKHLLAREAE AANWTRKRHI YGLDSTGANA NGRNRNGWLA PAPTLGYPPP PPAAVASPPV HHHHLRPLHV
301: WGHPTVDQSV MPHVWPKHLP PPSTAMATPP FWVSDTPYWP RIHNGTTPYL PTVATRFRTP PVAGIPQALP SHHMVNNYKP DHGFGGPRSL VDLHPSKESV
401: DAAIGDVLTR PWLPLPLGLK PPTVDGVITE LHRHGVSDVP PAASCA
101: NNKKGISGKG EEVVSKRDHN ETPVAETVVN YDGDSGRKRS HSSSGSTKRN PISNNEGKRK VKNHIENKII MFITPFYKVD WTPELHRRFV EAVEQLGLEK
201: AVPSRILELM GVHCLTRHNV ASHLQKYRSH RKHLLAREAE AANWTRKRHI YGLDSTGANA NGRNRNGWLA PAPTLGYPPP PPAAVASPPV HHHHLRPLHV
301: WGHPTVDQSV MPHVWPKHLP PPSTAMATPP FWVSDTPYWP RIHNGTTPYL PTVATRFRTP PVAGIPQALP SHHMVNNYKP DHGFGGPRSL VDLHPSKESV
401: DAAIGDVLTR PWLPLPLGLK PPTVDGVITE LHRHGVSDVP PAASCA
001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKTRLNE QVYNGFVFFL KVDWTPELHR RFVEAVEQLG VDKAVPSRIL
201: ELMGVHCLTR HNVASHLQKY RSHRKHLLAR EAEAANWTRK RHIYGVDTGA NLNGRTKNGW LAPAPTLGFP PPPPVAVAPP PVHHHHFRPL HVWGHPTVDQ
301: SIMPHVWPKH LPPPSTAMPN PPFWVSDSPY WHPMHNGTTP YLPTVATRFR APPVAGIPHA LPPHHTMYKP NLGFGGARPP VDLHPSKESV DAAIGDVLTR
401: PWLPLPLGLN PPAVDGVMTE LHRHGVSEVP PTASCA
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKTRLNE QVYNGFVFFL KVDWTPELHR RFVEAVEQLG VDKAVPSRIL
201: ELMGVHCLTR HNVASHLQKY RSHRKHLLAR EAEAANWTRK RHIYGVDTGA NLNGRTKNGW LAPAPTLGFP PPPPVAVAPP PVHHHHFRPL HVWGHPTVDQ
301: SIMPHVWPKH LPPPSTAMPN PPFWVSDSPY WHPMHNGTTP YLPTVATRFR APPVAGIPHA LPPHHTMYKP NLGFGGARPP VDLHPSKESV DAAIGDVLTR
401: PWLPLPLGLN PPAVDGVMTE LHRHGVSEVP PTASCA
Arabidopsis Description
GPRI1GBF's pro-rich region-interacting factor 1 [Source:UniProtKB/TrEMBL;Acc:F4IVF9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.