CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26988	Soybean	nucleus	86.47	85.49
KRH55898	Soybean	nucleus	62.61	64.08
VIT_12s0028g03100.t01	Wine grape	nucleus	60.09	63.13
KRH25644	Soybean	nucleus	59.63	60.75
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	25.46	57.81
PGSC0003DMT400024265	Potato	nucleus	58.72	56.76
PGSC0003DMT400056255	Potato	nucleus	40.14	55.2
GSMUA_Achr7P11040_001	Banana	nucleus	49.31	50.47
GSMUA_Achr2P15250_001	Banana	nucleus	48.62	50.0
GSMUA_Achr10P...	Banana	nucleus	47.48	48.36
Solyc07g053630.2.1	Tomato	golgi, mitochondrion, nucleus, plastid	57.8	46.41
AT5G44190.1	Thale cress	nucleus	41.05	46.37
CDY14913	Canola	nucleus	39.45	45.38
Bra036015.1-P	Field mustard	nucleus	38.3	45.14
AT2G20570.2	Thale cress	nucleus	44.95	44.95
CDY22303	Canola	nucleus	38.3	44.53
CDX94762	Canola	nucleus	38.3	44.53
Bra031129.1-P	Field mustard	nucleus	42.43	44.47
Bra033726.1-P	Field mustard	nucleus	37.84	44.0
Bra036482.1-P	Field mustard	nucleus	43.58	43.78
CDY05773	Canola	nucleus	44.72	43.72
CDX96952	Canola	nucleus	36.7	43.6
GSMUA_Achr6P05850_001	Banana	nucleus	43.58	43.18
Os06t0348800-01	Rice	mitochondrion, plastid	44.72	42.86
TraesCS7D01G347500.1	Wheat	nucleus	44.72	42.58
TraesCS7B01G251400.1	Wheat	nucleus	44.72	42.48
TraesCS7A01G339800.1	Wheat	nucleus	44.5	42.08
CDY31954	Canola	nucleus	43.12	41.78
HORVU7Hr1G083690.1	Barley	nucleus	43.81	41.61
HORVU0Hr1G007770.1	Barley	nucleus	43.81	41.61
HORVU0Hr1G010940.1	Barley	nucleus	43.81	41.61
Zm00001d044785_P001	Maize	nucleus	43.12	39.5
Os01t0239000-02	Rice	nucleus	47.94	38.78
EER88132	Sorghum	nucleus	41.28	38.63
Zm00001d039260_P002	Maize	nucleus	40.6	38.39
TraesCS3B01G191600.1	Wheat	nucleus	44.04	38.17
EES02166	Sorghum	nucleus	43.35	38.03
TraesCS3D01G168200.2	Wheat	nucleus	43.81	37.97
TraesCS3A01G161000.1	Wheat	nucleus	43.81	37.52
HORVU3Hr1G032440.2	Barley	nucleus	42.66	36.76
HORVU3Hr1G032410.2	Barley	nucleus	10.78	22.49
KRH77235	Soybean	nucleus	24.77	19.35
KRH28259	Soybean	nucleus	25.23	19.3
KRH57579	Soybean	nucleus	24.77	18.91
KRH04301	Soybean	nucleus	24.77	18.75
CDX81968	Canola	nucleus	42.89	18.32

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100775671	MapMan:15.5.2.3	EMBL:ACUP02008406	EnsemblPlantsGene:GLYMA_13G294300	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	UniProt:I1M3P9	InterPro:IPR017930	EnsemblPlants:KRH22338
ProteinID:KRH22338	ProteinID:KRH22338.1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR31312	PANTHER:PTHR31312:SF1	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000233BC3B
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:39386818..39391231

Molecular Weight (calculated)

47663.1 Da

IEP (calculated)

6.052

GRAVY (calculated)

-0.572

Length

436 amino acids

Sequence
(BLAST)

001: MLAVSPLRST RDEGGQGEIL ESVSIGTDDF ADLSEGNLLE SINFDDFFMG INDDGDVLPD LEMDPEMLAE FSLSTEDSEI ASSSVSVANN NNDGNNIVTT
101: TEKQDDEVII IASNSSSDSG SSQGEEIVSK SDESEVVVNP SPKESEKGRK SSNHASRNNN QGKRKVKVDW TPELHRRFVQ AVEQLGVDKA VPSRILEIMG
201: IDCLTRHNIA SHLQKYRSHR KHLLAREAEA ARWSQRKQLL GAAGAGRGGG SKREVNPWLA PTMGFPPMSP MHHFRPLHVW GHHNMDQSFM HMWPKHPPYS
301: PSPPAWPPRT APSPPSPDPL YWHQHQLAPN APTTGTPCFP QPLTTTRFGS QTVPGIPPRH AMYQIVDPGI GIPASQPPPR PLVDFHPSKE SIDAAISDVL
401: SKPWLPLPLG LKAPALDGVM GELQRQGIPK IPPSCA

Best Arabidopsis Sequence Match ( AT2G20570.1 )
(BLAST)

001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKVDWTP ELHRRFVEAV EQLGVDKAVP SRILELMGVH CLTRHNVASH
201: LQKYRSHRKH LLAREAEAAN WTRKRHIYGV DTGANLNGRT KNGWLAPAPT LGFPPPPPVA VAPPPVHHHH FRPLHVWGHP TVDQSIMPHV WPKHLPPPST
301: AMPNPPFWVS DSPYWHPMHN GTTPYLPTVA TRFRAPPVAG IPHALPPHHT MYKPNLGFGG ARPPVDLHPS KESVDAAIGD VLTRPWLPLP LGLNPPAVDG
401: VMTELHRHGV SEVPPTASCA

Arabidopsis Description

GPRI1GBF's pro-rich region-interacting factor 1 [Source:UniProtKB/TrEMBL;Acc:F4IVF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.