Factsheet for Solyc07g053630.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid, nucleus

Predictor Summary:

mitochondrion 2
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion, nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g088180.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G44190.1	Solyc02g088180.2.1	AT5G39610.1	23459204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024265	Potato	nucleus	74.03	89.14
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	22.28	63.02
VIT_12s0028g03100.t01	Wine grape	nucleus	46.96	61.45
KRH22338	Soybean	nucleus	46.41	57.8
KRH55898	Soybean	nucleus	44.38	56.57
KRH26988	Soybean	nucleus	45.49	56.01
KRH25644	Soybean	nucleus	43.28	54.91
GSMUA_Achr10P...	Banana	nucleus	37.94	48.13
GSMUA_Achr7P11040_001	Banana	nucleus	37.75	48.12
GSMUA_Achr2P15250_001	Banana	nucleus	36.83	47.17
AT2G20570.2	Thale cress	nucleus	37.38	46.56
AT5G44190.1	Thale cress	nucleus	32.41	45.6
Bra031129.1-P	Field mustard	nucleus	34.25	44.71
CDY14913	Canola	nucleus	31.12	44.59
Bra036015.1-P	Field mustard	nucleus	30.2	44.32
Os06t0348800-01	Rice	mitochondrion, plastid	36.83	43.96
TraesCS7A01G339800.1	Wheat	nucleus	36.46	42.95
CDX94762	Canola	nucleus	29.65	42.93
CDY05773	Canola	nucleus	34.99	42.6
CDX96952	Canola	nucleus	28.73	42.51
Bra036482.1-P	Field mustard	nucleus	33.89	42.4
TraesCS7D01G347500.1	Wheat	nucleus	35.73	42.36
TraesCS7B01G251400.1	Wheat	nucleus	35.54	42.05
CDY22303	Canola	nucleus	28.91	41.87
HORVU7Hr1G083690.1	Barley	nucleus	35.17	41.61
HORVU0Hr1G010940.1	Barley	nucleus	35.17	41.61
HORVU0Hr1G007770.1	Barley	nucleus	35.17	41.61
GSMUA_Achr6P05850_001	Banana	nucleus	33.52	41.36
Bra033726.1-P	Field mustard	nucleus	28.55	41.33
EER88132	Sorghum	nucleus	35.17	40.99
CDY31954	Canola	nucleus	33.52	40.44
Zm00001d044785_P001	Maize	nucleus	34.25	39.08
Zm00001d039260_P002	Maize	nucleus	32.78	38.61
EES02166	Sorghum	nucleus	34.99	38.23
TraesCS3D01G168200.2	Wheat	nucleus	34.07	36.78
TraesCS3A01G161000.1	Wheat	nucleus	34.25	36.54
HORVU3Hr1G032440.2	Barley	nucleus	33.89	36.36
Os01t0239000-02	Rice	nucleus	35.91	36.18
TraesCS3B01G191600.1	Wheat	nucleus	33.33	35.98
HORVU3Hr1G032410.2	Barley	nucleus	7.92	20.57
Solyc08g077230.2.1	Tomato	nucleus	20.63	20.0
Solyc06g061030.2.1	Tomato	nucleus	20.44	19.86
CDX81968	Canola	nucleus	34.44	18.32

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR017930	UniProt:K4CFQ8	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR31312	PANTHER:PTHR31312:SF1	InterPro:SANT/Myb	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc07g053630.2	EnsemblPlants:Solyc07g053630.2.1
TIGRFAMs:TIGR01557	UniParc:UPI000276C00F	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:-:62062717..62066811

Molecular Weight (calculated)

60048.5 Da

IEP (calculated)

7.859

GRAVY (calculated)

-0.489

Length

543 amino acids

Sequence
(BLAST)

001: MTFLYIKYKY LKKTNHFGYI TLYSTIKKYS NHFPSLEFTK LIIILSSLSL FLCSNLGHAR LNLQGKIQKF KNSIYVFIIM LVVSPFSNTT ARDERGNEME
101: SFAIGGGGGG GDDFPDFMGE NLLDSIDFDD LFVGINDGDV LPDLEMDTEI LAEFSVSSGD ESDVNNYSSS NNNNTFITTA IKNVERKEEI EKTGSVSASD
201: VGSGLTTSLN QGEEIVSTQK SEESTQQRNQ NIVTPKESDK GKKSSKNHNL PGKRKVKVDW TPELHRRFVQ AVEQLGVDKA VPSRILEIMG IDCLTRHNIA
301: SHLQKYRSHR KHLLAREVEA ASWSHRRQLY GGAPMVGGGG GKREMNPWPA PTIGFPPPPP LPPPVAPPMP HHFRPLQVWG HPSVDQSYMH MWPKHLAPSP
401: SPQHPSPAWA PPPHHLHPPP PLDPSFWHPH HQRVQNSLTP GTPYFPAPTR YPVPGIPPVS SHGMYKVDQS NIGVRSTATL PAQPLPEPPC DFHPSKESID
501: AAIGDVLSKP WLPLPLGLKP PAVDSVLGEL QRQGVPKIPP TCA

Best Arabidopsis Sequence Match ( AT2G20570.1 )
(BLAST)

001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKVDWTP ELHRRFVEAV EQLGVDKAVP SRILELMGVH CLTRHNVASH
201: LQKYRSHRKH LLAREAEAAN WTRKRHIYGV DTGANLNGRT KNGWLAPAPT LGFPPPPPVA VAPPPVHHHH FRPLHVWGHP TVDQSIMPHV WPKHLPPPST
301: AMPNPPFWVS DSPYWHPMHN GTTPYLPTVA TRFRAPPVAG IPHALPPHHT MYKPNLGFGG ARPPVDLHPS KESVDAAIGD VLTRPWLPLP LGLNPPAVDG
401: VMTELHRHGV SEVPPTASCA

Arabidopsis Description

GPRI1GBF's pro-rich region-interacting factor 1 [Source:UniProtKB/TrEMBL;Acc:F4IVF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.