Factsheet for Solyc06g061030.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068374	Potato	nucleus	92.31	93.14
Solyc08g077230.2.1	Tomato	nucleus	64.22	64.11
VIT_02s0012g00570.t01	Wine grape	nucleus	58.14	58.24
KRH77235	Soybean	nucleus	52.59	52.69
KRH28259	Soybean	nucleus	52.41	51.4
KRH57579	Soybean	nucleus	52.41	51.31
KRH04301	Soybean	nucleus	52.77	51.22
CDY44493	Canola	nucleus	44.01	49.6
Bra013277.1-P	Field mustard	nucleus	43.65	48.51
Bra013278.1-P	Field mustard	nucleus	43.65	48.51
CDX78822	Canola	nucleus	43.65	48.41
Bra012623.1-P	Field mustard	nucleus	43.29	47.17
CDX90427	Canola	nucleus	43.65	46.92
AT4G18020.1	Thale cress	nucleus	44.54	46.54
CDY01512	Canola	nucleus	42.58	45.86
Bra013279.1-P	Field mustard	nucleus	23.61	44.15
GSMUA_Achr11P...	Banana	nucleus	36.67	42.53
GSMUA_Achr2P18200_001	Banana	nucleus	39.36	39.71
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	10.02	29.17
Solyc07g053630.2.1	Tomato	golgi, mitochondrion, nucleus, plastid	19.86	20.44

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	Gene3D:3.40.50.2300	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR001789
InterPro:IPR017930	UniProt:K4C6T3	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00072	PFAM:PF00249
PFscan:PS50110	PFscan:PS51294	PANTHER:PTHR31312	PANTHER:PTHR31312:SF2	InterPro:SANT/Myb	SMART:SM00448
SUPFAM:SSF46689	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	EnsemblPlantsGene:Solyc06g061030.2	EnsemblPlants:Solyc06g061030.2.1	TIGRFAMs:TIGR01557
UniParc:UPI0001D64AD2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:39069041..39073805

Molecular Weight (calculated)

62312.5 Da

IEP (calculated)

6.662

GRAVY (calculated)

-0.602

Length

559 amino acids

Sequence
(BLAST)

001: MVCTENELLE WKDFPKGLKV LLLDTDSNFA SQMRSRLQQM DYIVYTFCNE NEALSAISSK SEVFHVAIVE VSAGNSDGGF KFLESAKDLP TIMVSDIHSI
101: NIMMKCIALG AVEFLQKPLS DDKLRNIWQH VVHKAFHSGG KSVSESLKPV KESLLSILEL QPVKHEADNE NTNEAEPLIS VVENQKASSS CCDKYPAPST
201: PQQKQGVRSV DDVDYQDHTI LSNEQDSGMH EGDTKSVETT SCDSVAETTV LADSSERLGE AITKEEHYSA ADQHMEDPIA TCSPSNDNGS TCSADPNKAS
301: GLHSSSGTKA NKKKMKVDWT PELHKKFVKA VEKIGIDQAI PSRILELMKV EGLTRHNIAS HLQKFRMQRK QILPKEDERR WPRPQPRDPV QRTYYPHKPV
401: MAFPTHHSNH ATTAGQFYPA WIPPGGYPNG AHMWNSPYYH GWQPPETWHW NPQPGLYADV WGCPVTPPSL GSCTPYPQNA SGFHRAEGML NGYSIIQKSV
501: DLHPAEEVID KVVKEAINKP WLPLPLGLKP PSTESVLDAL SKQGIPAVPP RHHRSHRPH

Best Arabidopsis Sequence Match ( AT4G18020.9 )
(BLAST)

001: MVITANDLSK WENFPKGLKV LLLLNGCDSD GDGSSAAETR SELESMDYIV TTFTDETEAL SAVVKNPESF HIAIVEVNMS AESESFKFLE AAKDVLPTIM
101: ISTDHCITTT MKCIALGAVE FLQKPLSPEK LKNIWQHVVH KAFNDGGSNV SISLKPVKES VVSMLHLETD MTIEEKDPAP STPQLKQDSR LLDGDCQENI
201: NFSMENVNSS TEKDNMEDHQ DIGESKSVDT TNRKLDDDKV VVKEERGDSE KEEEGETGDL ISEKTDSVDI HKKEDETKPI NKSSGIKNVS GNKTSRKKVD
301: WTPELHKKFV QAVEQLGVDQ AIPSRILELM KVGTLTRHNV ASHLQKFRQH RKNILPKDDH NHRWIQSREN HRPNQRNYNV FQQQHRPVMA YPVWGLPGVY
401: PPGAIPPLWP PPLQSIGQPP PWHWKPPYPT VSGNAWGCPV GPPVTGSYIT PSNTTAGGFQ YPNGAETGFK IMPASQPDEE MLDQVVKEAI SKPWLPLPLG
501: LKPPSAESVL AELTRQGISA VPSSSCLING SHRLR

Arabidopsis Description

APRR2Two-component response regulator-like APRR2 [Source:UniProtKB/Swiss-Prot;Acc:Q6LA43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.