CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78822	Canola	nucleus	94.35	92.86
Bra013279.1-P	Field mustard	nucleus	48.39	80.27
CDY01512	Canola	nucleus	78.02	74.57
CDX90427	Canola	nucleus	77.62	74.04
AT4G18020.1	Thale cress	nucleus	74.4	68.97
VIT_02s0012g00570.t01	Wine grape	nucleus	55.24	49.1
KRH04301	Soybean	nucleus	53.63	46.18
KRH77235	Soybean	nucleus	51.81	46.06
KRH57579	Soybean	nucleus	52.82	45.88
KRH28259	Soybean	nucleus	52.42	45.61
PGSC0003DMT400068374	Potato	nucleus	50.2	44.95
Solyc06g061030.2.1	Tomato	nucleus	49.6	44.01
PGSC0003DMT400062232	Potato	nucleus	49.4	43.75
GSMUA_Achr11P...	Banana	nucleus	41.13	42.32
Solyc08g077230.2.1	Tomato	nucleus	47.58	42.14
GSMUA_Achr2P18200_001	Banana	nucleus	45.36	40.61
CDY14913	Canola	nucleus	20.77	27.18
CDY22303	Canola	nucleus	19.96	26.4
CDX94762	Canola	nucleus	19.76	26.13
CDX96952	Canola	nucleus	18.95	25.61
CDY31954	Canola	nucleus	21.57	23.78
CDY05773	Canola	nucleus	21.37	23.77
CDX81968	Canola	nucleus	18.75	9.11

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	Gene3D:3.40.50.2300	GO:A0A078I5T4	UniProt:A0A078I5T4	EnsemblPlants:CDY44493
ProteinID:CDY44493	ProteinID:CDY44493.1	InterPro:CheY-like_superfamily	GO:GO:0000160	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00080249001	InterPro:Homeobox-like_sf	InterPro:IPR001789
InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00072	PFAM:PF00249	PFscan:PS50110
PFscan:PS51294	PANTHER:PTHR31312	PANTHER:PTHR31312:SF2	InterPro:SANT/Myb	SUPFAM:SSF46689	SUPFAM:SSF52172
InterPro:Sig_transdc_resp-reg_receiver	TIGRFAMs:TIGR01557	UniParc:UPI0004EDEC3A	SEG:seg	:	:

Description

BnaC01g10560DBnaC01g10560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I5T4]

Coordinates

chrLK032592:+:17649..21673

Molecular Weight (calculated)

55435.7 Da

IEP (calculated)

6.800

GRAVY (calculated)

-0.636

Length

496 amino acids

Sequence
(BLAST)

001: MVFTSNDISK WENFPKGLRV LLLDCGDGIS AAETRSKLES MDYIVTTFTD GTEALSAVIK SLESFHIAIV EVNTSDENES FKFLEAAKDH LPTIMISNDH
101: CITTTMKCIA LGAVEFLQKP LSPEKLKNIW QHVVHKAFND GGTDVSESLK PVKESVVSML HLDTDMTIDE KDSAPSTPQL KQVSRLLDGG DRQENINSST
201: EKENMEDQDI GESKSVDTTN HDNNVIVKEE KEDGGTGDMK SEKTDSVKFQ KKEDETTKHN NKSTGIKNLS GNKPSRKKVD WTQELHKKFV QAVDQLGVDQ
301: AIPSRILELM KVDGLTRHNV ASHLQKFRMH RRNILPKEDH NHRWIQSREN HRKIQRQYNG FQQQHRPVMA YPVWGLPGVH PPGAVPPLWP PPLQSSGQLP
401: PWHWRPPYPT VNGNAWGCPV VQPVTGTFTT PPATQLDEEM VDQVVKEAIS KPWLPLPLGL KPPSAESVLA ELSRQGISAV PSSSSSCPIN GSRRLR

Best Arabidopsis Sequence Match ( AT4G18020.9 )
(BLAST)

001: MVITANDLSK WENFPKGLKV LLLLNGCDSD GDGSSAAETR SELESMDYIV TTFTDETEAL SAVVKNPESF HIAIVEVNMS AESESFKFLE AAKDVLPTIM
101: ISTDHCITTT MKCIALGAVE FLQKPLSPEK LKNIWQHVVH KAFNDGGSNV SISLKPVKES VVSMLHLETD MTIEEKDPAP STPQLKQDSR LLDGDCQENI
201: NFSMENVNSS TEKDNMEDHQ DIGESKSVDT TNRKLDDDKV VVKEERGDSE KEEEGETGDL ISEKTDSVDI HKKEDETKPI NKSSGIKNVS GNKTSRKKVD
301: WTPELHKKFV QAVEQLGVDQ AIPSRILELM KVGTLTRHNV ASHLQKFRQH RKNILPKDDH NHRWIQSREN HRPNQRNYNV FQQQHRPVMA YPVWGLPGVY
401: PPGAIPPLWP PPLQSIGQPP PWHWKPPYPT VSGNAWGCPV GPPVTGSYIT PSNTTAGGFQ YPNGAETGFK IMPASQPDEE MLDQVVKEAI SKPWLPLPLG
501: LKPPSAESVL AELTRQGISA VPSSSCLING SHRLR

Arabidopsis Description

APRR2Two-component response regulator-like APRR2 [Source:UniProtKB/Swiss-Prot;Acc:Q6LA43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.