Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G44190.1 | CDX67433 | AT5G39610.1 | 23459204 |
| AT5G44190.1 | CDX74442 | AT5G39610.1 | 23459204 |
| AT5G44190.1 | CDY30258 | AT5G39610.1 | 23459204 |
| AT5G44190.1 | CDY37008 | AT5G39610.1 | 23459204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22303 | Canola | nucleus | 87.47 | 87.47 |
| AT5G44190.1 | Thale cress | nucleus | 68.8 | 66.84 |
| CDX96952 | Canola | nucleus | 63.2 | 64.58 |
| CDY14913 | Canola | nucleus | 65.07 | 64.38 |
| PGSC0003DMT400056255 | Potato | nucleus | 34.67 | 41.01 |
| Solyc10g008160.2.1 | Tomato | mitochondrion, nucleus | 20.53 | 40.1 |
| KRH25644 | Soybean | nucleus | 44.53 | 39.02 |
| KRH55898 | Soybean | nucleus | 44.0 | 38.73 |
| KRH22338 | Soybean | nucleus | 44.53 | 38.3 |
| KRH26988 | Soybean | nucleus | 44.53 | 37.87 |
| VIT_12s0028g03100.t01 | Wine grape | nucleus | 40.27 | 36.39 |
| PGSC0003DMT400024265 | Potato | nucleus | 42.67 | 35.48 |
| GSMUA_Achr7P11040_001 | Banana | nucleus | 40.0 | 35.21 |
| GSMUA_Achr2P15250_001 | Banana | nucleus | 38.93 | 34.43 |
| CDY05773 | Canola | nucleus | 40.53 | 34.08 |
| CDY31954 | Canola | nucleus | 40.0 | 33.33 |
| GSMUA_Achr10P... | Banana | nucleus | 36.8 | 32.24 |
| Os06t0348800-01 | Rice | mitochondrion, plastid | 38.67 | 31.87 |
| GSMUA_Achr6P05850_001 | Banana | nucleus | 37.33 | 31.82 |
| EER88132 | Sorghum | nucleus | 38.4 | 30.9 |
| Zm00001d039260_P002 | Maize | nucleus | 37.33 | 30.37 |
| TraesCS7A01G339800.1 | Wheat | nucleus | 37.07 | 30.15 |
| HORVU0Hr1G007770.1 | Barley | nucleus | 36.8 | 30.07 |
| HORVU7Hr1G083690.1 | Barley | nucleus | 36.8 | 30.07 |
| HORVU0Hr1G010940.1 | Barley | nucleus | 36.8 | 30.07 |
| TraesCS7B01G251400.1 | Wheat | nucleus | 36.8 | 30.07 |
| TraesCS7D01G347500.1 | Wheat | nucleus | 36.53 | 29.91 |
| HORVU3Hr1G032440.2 | Barley | nucleus | 40.27 | 29.84 |
| Solyc07g053630.2.1 | Tomato | golgi, mitochondrion, nucleus, plastid | 42.93 | 29.65 |
| Zm00001d044785_P001 | Maize | nucleus | 37.33 | 29.41 |
| TraesCS3D01G168200.2 | Wheat | nucleus | 39.2 | 29.22 |
| TraesCS3A01G161000.1 | Wheat | nucleus | 39.47 | 29.08 |
| EES02166 | Sorghum | nucleus | 38.4 | 28.97 |
| TraesCS3B01G191600.1 | Wheat | nucleus | 38.4 | 28.63 |
| Os01t0239000-02 | Rice | nucleus | 40.0 | 27.83 |
| CDX78822 | Canola | nucleus | 27.73 | 20.63 |
| CDY01512 | Canola | nucleus | 28.0 | 20.23 |
| CDX90427 | Canola | nucleus | 27.47 | 19.81 |
| CDY44493 | Canola | nucleus | 26.13 | 19.76 |
| HORVU3Hr1G032410.2 | Barley | nucleus | 10.93 | 19.62 |
| CDX81968 | Canola | nucleus | 39.73 | 14.59 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078E0U7 | EnsemblPlants:CDX94762 | ProteinID:CDX94762 | ProteinID:CDX94762.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00158205001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31312 |
| PANTHER:PTHR31312:SF1 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EDAFF1 | SEG:seg |
Description
BnaC07g17710D
Coordinates
chrLK031884:+:931951..934406
Molecular Weight (calculated)
41335.8 Da
IEP (calculated)
6.463
GRAVY (calculated)
-0.568
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTVSPLVVN TTSRDHYMAA DFADFTTEGL PDFTAEEGSL DVLEGIDFYD DLFIEFNGDD VLPDLEIDSD VLGEYSGSGR DEELEMEGNT SAASETSERD
101: GGWCKPEGTD KTVRKGKRKG KKSKDCLSSD NGIKKKPKVD WTPELHRKFV EAVERLGVDK AVPSRILEIM NVKSLNRHNV ASHLQKYRSH RKHLLAREAE
201: AASWNLRRHA TVAVPEGGEK VSMALPALGY PQHVTPLHQG HFRPLHVWGH PTWPKHKPNN PSSSPHRTFP VPPAVAIPPS CWPGQLPYWH LQTLYPQGYG
301: MASSNHSSIG VPTRPLGPTN PPIDIHPSNE SIDAALGDVI TKPWLPLPLG LNPPSVDGVM TELQRQGISN VPPLP
101: GGWCKPEGTD KTVRKGKRKG KKSKDCLSSD NGIKKKPKVD WTPELHRKFV EAVERLGVDK AVPSRILEIM NVKSLNRHNV ASHLQKYRSH RKHLLAREAE
201: AASWNLRRHA TVAVPEGGEK VSMALPALGY PQHVTPLHQG HFRPLHVWGH PTWPKHKPNN PSSSPHRTFP VPPAVAIPPS CWPGQLPYWH LQTLYPQGYG
301: MASSNHSSIG VPTRPLGPTN PPIDIHPSNE SIDAALGDVI TKPWLPLPLG LNPPSVDGVM TELQRQGISN VPPLP
001: MLTVSPAPVL IGNNSKDTYM AADFADFTTE DLPDFTTVGD FSDDLLDGID YYDDLFIGFD GDDVLPDLEI DSEILGEYSG SGRDEEQEME GNTSTASETS
101: ERDVGVCKQE GGGGGDGGFR DKTVRRGKRK GKKSKDCLSD ENDIKKKPKV DWTPELHRKF VQAVEQLGVD KAVPSRILEI MNVKSLTRHN VASHLQKYRS
201: HRKHLLAREA EAASWNLRRH ATVAVPGVGG GGKKPWTAPA LGYPPHVAPM HHGHFRPLHV WGHPTWPKHK PNTPASAHRT YPMPAIAAAP ASWPGHPPYW
301: HQQPLYPQGY GMASSNHSSI GVPTRQLGPT NPPIDIHPSN ESIDAAIGDV ISKPWLPLPL GLKPPSVDGV MTELQRQGVS NVPPLP
101: ERDVGVCKQE GGGGGDGGFR DKTVRRGKRK GKKSKDCLSD ENDIKKKPKV DWTPELHRKF VQAVEQLGVD KAVPSRILEI MNVKSLTRHN VASHLQKYRS
201: HRKHLLAREA EAASWNLRRH ATVAVPGVGG GGKKPWTAPA LGYPPHVAPM HHGHFRPLHV WGHPTWPKHK PNTPASAHRT YPMPAIAAAP ASWPGHPPYW
301: HQQPLYPQGY GMASSNHSSI GVPTRQLGPT NPPIDIHPSN ESIDAAIGDV ISKPWLPLPL GLKPPSVDGV MTELQRQGVS NVPPLP
Arabidopsis Description
GLK2Transcription activator GLK2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFH0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.