Factsheet for Os06t0348800-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

mitochondrion: 15069638
plastid: 15069638

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G347500.1	Wheat	nucleus	67.91	67.47
HORVU7Hr1G083690.1	Barley	nucleus	66.15	65.58
HORVU0Hr1G010940.1	Barley	nucleus	66.15	65.58
HORVU0Hr1G007770.1	Barley	nucleus	66.15	65.58
TraesCS7A01G339800.1	Wheat	nucleus	66.37	65.51
TraesCS7B01G251400.1	Wheat	nucleus	64.18	63.62
Zm00001d044785_P001	Maize	nucleus	65.05	62.18
EER88132	Sorghum	nucleus	62.64	61.16
GSMUA_Achr10P...	Banana	nucleus	52.09	55.37
GSMUA_Achr7P11040_001	Banana	nucleus	49.89	53.29
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	21.98	52.08
GSMUA_Achr2P15250_001	Banana	nucleus	46.37	49.76
PGSC0003DMT400056255	Potato	nucleus	33.63	48.27
VIT_12s0028g03100.t01	Wine grape	nucleus	43.74	47.95
GSMUA_Achr6P05850_001	Banana	nucleus	44.62	46.14
PGSC0003DMT400024265	Potato	nucleus	44.4	44.79
KRH22338	Soybean	nucleus	42.86	44.72
KRH26988	Soybean	nucleus	43.3	44.67
KRH25644	Soybean	nucleus	41.1	43.69
KRH55898	Soybean	nucleus	39.78	42.49
Bra031129.1-P	Field mustard	nucleus	38.24	41.83
Bra036015.1-P	Field mustard	nucleus	33.85	41.62
Os01t0239000-02	Rice	nucleus	49.01	41.37
AT5G44190.1	Thale cress	nucleus	34.95	41.19
AT2G20570.2	Thale cress	nucleus	39.34	41.05
CDY14913	Canola	nucleus	34.07	40.9
CDX96952	Canola	nucleus	31.87	39.51
CDY05773	Canola	nucleus	38.02	38.79
CDX94762	Canola	nucleus	31.87	38.67
Bra036482.1-P	Field mustard	nucleus	36.7	38.48
CDY22303	Canola	nucleus	31.65	38.4
Bra033726.1-P	Field mustard	nucleus	31.43	38.13
CDY31954	Canola	nucleus	37.14	37.56
Solyc07g053630.2.1	Tomato	golgi, mitochondrion, nucleus, plastid	43.96	36.83
CDX81968	Canola	nucleus	38.24	17.04

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	EntrezGene:4340977	EMBL:AK061946	EMBL:AK065184	EMBL:AK098909
EMBL:AK122161	ProteinID:BAD62070.1	ProteinID:BAD62071.1	ProteinID:BAF19497.2	ProteinID:BAS97664.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0010638	GO:GO:0016043	GO:GO:0045893	InterPro:Homeobox-like_sf
InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	EnsemblPlantsGene:Os06g0348800	EnsemblPlants:Os06t0348800-01	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR31312	PANTHER:PTHR31312:SF3	UniProt:Q5Z5I4	InterPro:SANT/Myb	SUPFAM:SSF46689
TIGRFAMs:TIGR01557	UniParc:UPI000045073F	RefSeq:XP_015644244.1	SEG:seg	:	:

Description

light-related transcription factor OsGLK1, Golden2-like 1, G2-like 1Transfactor-like protein. (Os06t0348800-01);Homeodomain-like containing protein. (Os06t0348800-02);Transfactor-like protein. (Os06t0348800-03)

Coordinates

chr6:+:14078261..14082137

Molecular Weight (calculated)

48517.2 Da

IEP (calculated)

4.683

GRAVY (calculated)

-0.378

Length

455 amino acids

Sequence
(BLAST)

001: MLAVSPAMCP DIEDRAAVAG DAGMEVVGMS SDDMDQFDFS VDDIDFGDFF LRLEDGDVLP DLEVDPAEIF TDFEAIATSG GEGVQDQEVP TVELLAPADD
101: VGVLDPCGDV VVGEENAAFA GAGEEKGGCN QDDDAGEANV DDGAAAVEAK SSSPSSTTSS SQEAESRHKS SSKSSHGKKK AKVDWTPELH RRFVQAVEQL
201: GIDKAVPSRI LEIMGIDSLT RHNIASHLQK YRSHRKHMIA REAEAASWTQ RRQIYAAGGG AVAKRPESNA WTVPTIGFPP PPPPPPSPAP IQHFARPLHV
301: WGHPTMDPSR VPVWPPRHLV PRGPAPPWVP PPPPSDPAFW HHPYMRGPAH VPTQGTPCMA MPMPAARFPA PPVPGVVPCP MYRPLTPPAL ASKNQQDAQL
401: QLQVQPSSES IDAAIGDVLS KPWLPLPLGL KPPSVDSVMG ELQRQGVANV PPACG

Best Arabidopsis Sequence Match ( AT2G20570.1 )
(BLAST)

001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKVDWTP ELHRRFVEAV EQLGVDKAVP SRILELMGVH CLTRHNVASH
201: LQKYRSHRKH LLAREAEAAN WTRKRHIYGV DTGANLNGRT KNGWLAPAPT LGFPPPPPVA VAPPPVHHHH FRPLHVWGHP TVDQSIMPHV WPKHLPPPST
301: AMPNPPFWVS DSPYWHPMHN GTTPYLPTVA TRFRAPPVAG IPHALPPHHT MYKPNLGFGG ARPPVDLHPS KESVDAAIGD VLTRPWLPLP LGLNPPAVDG
401: VMTELHRHGV SEVPPTASCA

Arabidopsis Description

GPRI1GBF's pro-rich region-interacting factor 1 [Source:UniProtKB/TrEMBL;Acc:F4IVF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.