CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031129.1-P	Field mustard	nucleus	38.69	94.95
CDY05773	Canola	nucleus	28.8	65.92
AT2G20570.2	Thale cress	nucleus	28.11	65.83
CDY31954	Canola	nucleus	28.01	63.56
PGSC0003DMT400056255	Potato	nucleus	14.59	47.0
VIT_12s0028g03100.t01	Wine grape	nucleus	18.51	45.54
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	8.52	45.31
KRH55898	Soybean	nucleus	18.32	43.9
KRH25644	Soybean	nucleus	18.22	43.46
CDY14913	Canola	nucleus	16.06	43.27
PGSC0003DMT400024265	Potato	nucleus	19.0	43.02
GSMUA_Achr7P11040_001	Banana	nucleus	17.92	42.96
KRH22338	Soybean	nucleus	18.32	42.89
GSMUA_Achr10P...	Banana	nucleus	17.63	42.06
CDX96952	Canola	nucleus	14.99	41.69
CDY22303	Canola	nucleus	15.28	41.6
KRH26988	Soybean	nucleus	17.92	41.5
GSMUA_Achr2P15250_001	Banana	nucleus	16.75	40.33
CDX94762	Canola	nucleus	14.59	39.73
Os06t0348800-01	Rice	mitochondrion, plastid	17.04	38.24
TraesCS7D01G347500.1	Wheat	nucleus	16.26	36.24
HORVU0Hr1G007770.1	Barley	nucleus	16.16	35.95
HORVU7Hr1G083690.1	Barley	nucleus	16.16	35.95
HORVU0Hr1G010940.1	Barley	nucleus	16.16	35.95
TraesCS7A01G339800.1	Wheat	nucleus	16.16	35.79
EER88132	Sorghum	nucleus	16.26	35.62
TraesCS7B01G251400.1	Wheat	nucleus	15.96	35.51
Zm00001d039260_P002	Maize	nucleus	15.87	35.14
GSMUA_Achr6P05850_001	Banana	nucleus	14.89	34.55
Solyc07g053630.2.1	Tomato	golgi, mitochondrion, nucleus, plastid	18.32	34.44
Zm00001d044785_P001	Maize	nucleus	15.96	34.24
TraesCS3D01G168200.2	Wheat	nucleus	16.85	34.19
TraesCS3B01G191600.1	Wheat	nucleus	16.65	33.8
TraesCS3A01G161000.1	Wheat	nucleus	16.85	33.79
HORVU3Hr1G032440.2	Barley	nucleus	16.65	33.6
EES02166	Sorghum	nucleus	16.26	33.4
Os01t0239000-02	Rice	nucleus	17.24	32.65
HORVU3Hr1G032410.2	Barley	nucleus	4.02	19.62
CDX90427	Canola	nucleus	9.79	19.23
CDX78822	Canola	nucleus	9.4	19.05
CDY44493	Canola	nucleus	9.11	18.75
CDY01512	Canola	nucleus	9.4	18.5

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:A0A078D3V4	EnsemblPlants:CDX81968	ProteinID:CDX81968	ProteinID:CDX81968.1
InterPro:DUF4283	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00136942001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFAM:PF14111
PFAM:PF14392	PFscan:PS51294	PANTHER:PTHR31312	PANTHER:PTHR31312:SF1	InterPro:SANT/Myb	SUPFAM:SSF46689
TIGRFAMs:TIGR01557	UniParc:UPI0004EEBDD3	InterPro:Zn_knuckle_CX2CX4HX4C	SEG:seg	:	:

Description

BnaC08g36330D

Coordinates

chrLK031826:+:1719731..1724000

Molecular Weight (calculated)

111700.0 Da

IEP (calculated)

9.218

GRAVY (calculated)

-0.531

Length

1021 amino acids

Sequence
(BLAST)

0001: MLALSPARNS ARGGCFDGES EFLATSSDFT INPEENFPVF TDQGDLLDII DFDDLFGVAG DVLPDLEIDP EILAGDFSAS SSSEKTDSQG ETNKKGISEE
0101: VVSKRDEDET AMSEKMANYV DGDSNRKRKY SSSSGSSKNN SNEGKRKVKK VDWTPELHRR FVDAVEQLGL EKAVPSRILE LMGVHCLTRH NVASHLQKYR
0201: SHRKHVLARE AEAANWTRKR HIYGLDSTGV NINGRNKNGW IAPAPTIGYA PPPPAAVASP TIHHHHFRPL HVWGHPTVNQ SVIPHVFPKH LPPPSTAMAT
0301: TPFWVSDNPY WPRVHNGTAP YFPTVATRFR APPVAGIPQA MPPHHTVYKP DHGYGGSRSL VDLHPSKESV DAAIGDVLTR PWLPLPLGLK PPAFDGVMTE
0401: LHRHGVSEST INPRGRKHLQ RIFLSLPKAK LRSLSFALIR RRCRRRSPPP PYMAKKKKPK PVSSGASPVA SIDSSVPSAS SSATVPVSPD PAAASSPALE
0501: EGEISPFSAS FHHLATAENF QDQNSSPIAD LQEKGLEVLE NPNAQTAATE PTVPVNPITE AAATESHVPV STHPEKPLQS DKLQSPPVAP IASNQASESS
0601: QLQAQPTTVF KDQAKQWVDK VKTKARKLDP EGTPFTLESG EACVKIPNSV IEKNRKSWDS FIIGQFYEEA PARAKIHAIV NGMWSKHRRD IAVSKMNGNA
0701: FLFRVPCPNA RRCILSQCLW QVDGQTLFVA KWSPGLKPEK PSLATVPVWL DFTGVPLQFF NEDALKEIAV LVGHPLCLHP TTSNLTNIEV ARVYTVIDLR
0801: KPLPEAVNAQ FETGEITRTT VSSPWLPSLC SHCKKVGHTI SRFSLAPPTC ATCRSVKHNT DACPRNSNHH RQGKEPIASQ YPIVPNPAAS RYKNNPGPRA
0901: TGPAPSSHSK KGNSIWIRAD PSALEDNGKR QASRSIPLLP AGVPRHDEGL KDFCVDLRSN LFTSGSKAPS TASSTSQSDS EDLSYDDDNP DIEGDKYIEV
1001: ISKRKKKLSR ALARARGPLN L

Best Arabidopsis Sequence Match ( AT2G20570.1 )
(BLAST)

001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKVDWTP ELHRRFVEAV EQLGVDKAVP SRILELMGVH CLTRHNVASH
201: LQKYRSHRKH LLAREAEAAN WTRKRHIYGV DTGANLNGRT KNGWLAPAPT LGFPPPPPVA VAPPPVHHHH FRPLHVWGHP TVDQSIMPHV WPKHLPPPST
301: AMPNPPFWVS DSPYWHPMHN GTTPYLPTVA TRFRAPPVAG IPHALPPHHT MYKPNLGFGG ARPPVDLHPS KESVDAAIGD VLTRPWLPLP LGLNPPAVDG
401: VMTELHRHGV SEVPPTASCA

Arabidopsis Description

GPRI1GBF's pro-rich region-interacting factor 1 [Source:UniProtKB/TrEMBL;Acc:F4IVF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.