Factsheet for TraesCS3A01G161000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G168200.2	Wheat	nucleus	94.3	95.43
TraesCS3B01G191600.1	Wheat	nucleus	86.84	87.87
HORVU3Hr1G032440.2	Barley	nucleus	79.17	79.64
Os01t0239000-02	Rice	nucleus	57.96	54.73
EES02166	Sorghum	nucleus	49.51	50.7
Zm00001d039260_P002	Maize	nucleus	45.78	50.54
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	18.66	49.48
GSMUA_Achr7P11040_001	Banana	nucleus	40.67	48.59
PGSC0003DMT400056255	Potato	nucleus	30.06	48.27
GSMUA_Achr10P...	Banana	nucleus	39.88	47.43
GSMUA_Achr2P15250_001	Banana	nucleus	38.51	46.23
VIT_12s0028g03100.t01	Wine grape	nucleus	36.94	45.3
KRH25644	Soybean	nucleus	37.13	44.16
KRH22338	Soybean	nucleus	37.52	43.81
GSMUA_Achr6P05850_001	Banana	nucleus	37.33	43.18
Bra036015.1-P	Field mustard	nucleus	31.24	42.97
KRH26988	Soybean	nucleus	36.74	42.4
PGSC0003DMT400024265	Potato	nucleus	37.52	42.35
CDY14913	Canola	nucleus	31.43	42.22
TraesCS7A01G339800.1	Wheat	nucleus	38.11	42.08
Bra031129.1-P	Field mustard	nucleus	34.38	42.07
KRH55898	Soybean	nucleus	35.17	42.02
HORVU3Hr1G032410.2	Barley	nucleus	17.09	41.63
AT2G20570.2	Thale cress	nucleus	34.97	40.83
CDY22303	Canola	nucleus	29.27	39.73
CDX94762	Canola	nucleus	29.08	39.47
AT5G44190.1	Thale cress	nucleus	29.86	39.38
CDY05773	Canola	nucleus	34.38	39.24
Bra033726.1-P	Field mustard	nucleus	28.88	39.2
Bra036482.1-P	Field mustard	nucleus	33.01	38.71
CDX96952	Canola	nucleus	27.7	38.42
CDY31954	Canola	nucleus	33.2	37.56
Solyc07g053630.2.1	Tomato	golgi, mitochondrion, nucleus, plastid	36.54	34.25
CDX81968	Canola	nucleus	33.79	16.85

Protein Annotations

EnsemblPlants:TraesCS3A01G161000.1	EnsemblPlantsGene:TraesCS3A01G161000	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	InterPro:SANT/Myb
PANTHER:PTHR31312	PANTHER:PTHR31312:SF1	PFAM:PF00249	PFscan:PS51294	SEG:seg	SUPFAM:SSF46689
TIGRFAMs:TIGR01557	MapMan:15.5.2.3	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:161460419..161465964

Molecular Weight (calculated)

54838.8 Da

IEP (calculated)

6.069

GRAVY (calculated)

-0.501

Length

509 amino acids

Sequence
(BLAST)

001: MLEVATLQSP NPAVFSLGDH HHVDVGFPEA TVEEDDFLLD YIDFSTCDMP FFHVDDGDDI LPDLEVDPTE LLAEFADEPA TTTVLSPAAE PAPDSCETHH
101: GDEAKTAVET DLPAEMDMEL PEGKGETKGL MSSSEEKDVK QQHDNKNNNN NNNNIVGDEV CSAVTTDDSS AAVGSENSKS SASAKGHSKM TSKPASAAAA
201: TKSSHGRRKV KVDWTPELHR RFVQAVEQLG LDKAVPSRIL ELMGNEYRLT RHNIASHLQK YRSHRKHLMA REAEAASWTQ KRQMYAAAGG PRKDAAAGGG
301: PWVVPTVGFP PPGAMPPHAG MAHHPGQPPP FCRPLHVWGH PTGVDATLPL SPPSMLPVWP RHLAPPPAWA QQPPVDPVYW HQQYNAARKW GPQAVTQCVP
401: PPMPPAAMMQ RFAAPPMPGM VPHPMYRPIP PPPSPVPQSN KVAGLQLQLD AHPSKESIDA AIGDVLVKPW LPLPLGLKPP SLDSVMSELH KQGIPKVPPA
501: ATTNCGGAA

Best Arabidopsis Sequence Match ( AT2G20570.1 )
(BLAST)

001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKVDWTP ELHRRFVEAV EQLGVDKAVP SRILELMGVH CLTRHNVASH
201: LQKYRSHRKH LLAREAEAAN WTRKRHIYGV DTGANLNGRT KNGWLAPAPT LGFPPPPPVA VAPPPVHHHH FRPLHVWGHP TVDQSIMPHV WPKHLPPPST
301: AMPNPPFWVS DSPYWHPMHN GTTPYLPTVA TRFRAPPVAG IPHALPPHHT MYKPNLGFGG ARPPVDLHPS KESVDAAIGD VLTRPWLPLP LGLNPPAVDG
401: VMTELHRHGV SEVPPTASCA

Arabidopsis Description

GPRI1GBF's pro-rich region-interacting factor 1 [Source:UniProtKB/TrEMBL;Acc:F4IVF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.