CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036482.1-P	Field mustard	nucleus	93.11	96.54
CDY05773	Canola	nucleus	90.67	91.48
AT2G20570.2	Thale cress	nucleus	66.0	68.12
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	19.11	44.79
VIT_12s0028g03100.t01	Wine grape	nucleus	40.89	44.34
PGSC0003DMT400056255	Potato	nucleus	30.67	43.53
KRH22338	Soybean	nucleus	41.78	43.12
KRH25644	Soybean	nucleus	39.78	41.82
GSMUA_Achr7P11040_001	Banana	nucleus	39.56	41.78
KRH26988	Soybean	nucleus	40.89	41.72
CDY22303	Canola	nucleus	34.67	41.6
GSMUA_Achr10P...	Banana	nucleus	39.56	41.59
KRH55898	Soybean	nucleus	38.89	41.08
PGSC0003DMT400024265	Potato	nucleus	40.89	40.8
CDY14913	Canola	nucleus	34.22	40.63
CDX94762	Canola	nucleus	33.33	40.0
GSMUA_Achr2P15250_001	Banana	nucleus	36.89	39.15
CDX96952	Canola	nucleus	31.56	38.69
Os06t0348800-01	Rice	mitochondrion, plastid	37.56	37.14
GSMUA_Achr6P05850_001	Banana	nucleus	35.56	36.36
TraesCS7D01G347500.1	Wheat	nucleus	36.0	35.37
Zm00001d039260_P002	Maize	nucleus	36.22	35.36
EER88132	Sorghum	nucleus	36.22	34.98
HORVU0Hr1G007770.1	Barley	nucleus	35.33	34.64
HORVU0Hr1G010940.1	Barley	nucleus	35.33	34.64
HORVU7Hr1G083690.1	Barley	nucleus	35.33	34.64
TraesCS7A01G339800.1	Wheat	nucleus	35.33	34.49
HORVU3Hr1G032440.2	Barley	nucleus	38.67	34.39
TraesCS7B01G251400.1	Wheat	nucleus	34.89	34.2
Zm00001d044785_P001	Maize	nucleus	35.56	33.61
TraesCS3D01G168200.2	Wheat	nucleus	37.56	33.6
Solyc07g053630.2.1	Tomato	golgi, mitochondrion, nucleus, plastid	40.44	33.52
TraesCS3A01G161000.1	Wheat	nucleus	37.56	33.2
TraesCS3B01G191600.1	Wheat	nucleus	37.11	33.2
EES02166	Sorghum	nucleus	36.67	33.2
Os01t0239000-02	Rice	nucleus	38.44	32.1
CDX81968	Canola	nucleus	63.56	28.01
CDY44493	Canola	nucleus	23.78	21.57
CDY01512	Canola	nucleus	24.67	21.39
CDX78822	Canola	nucleus	23.78	21.23
CDX90427	Canola	nucleus	23.78	20.58
HORVU3Hr1G032410.2	Barley	nucleus	8.44	18.18

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:A0A078H3G4	UniProt:A0A078H3G4	EnsemblPlants:CDY31954	ProteinID:CDY31954
ProteinID:CDY31954.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00050744001	InterPro:Homeobox-like_sf
InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31312
PANTHER:PTHR31312:SF1	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0004EEF461	SEG:seg

Description

BnaA07g00410DBnaA07g00410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3G4]

Coordinates

chrLK032283:-:149391..152101

Molecular Weight (calculated)

49248.1 Da

IEP (calculated)

7.499

GRAVY (calculated)

-0.485

Length

450 amino acids

Sequence
(BLAST)

001: MLALSPERNS TRDDGESEFL ATSCGFSINP EEDFPEFAIH GDLLDIIDFD DLFGVAGDVL PDLEMDPEIL GGDLSVHVNA SSTITTTTSS SEKTESQGKA
101: NNKKGISGKG EEVVSKRDHN ETPLAETVVN YDGDSGRKRK HSSTGSTKSN PISNNEGKRK VKLYTVVYIL TGPNGLIFIR KKVDWTPELH RRFVEAVEKL
201: GLEKAVPSRI LELMGVHCLT RHNVASHLQK YRSHRKHLVA REAEAANWTR KRHIYGLDST GANANGRNRN GWLAPAPTLG YPPPPPAAVA SPSVHHHHFR
301: PLHVWGHPTV DQSVMPHVWP KHLSPPSTAM ATPPFWVSDT PYWPRSHNGT TPYLPTVATR FTTPPVAGIP QALPSHHMVY NYKPDHGFGG PRSLVDLHPS
401: KESVDAAIGD VLTRPWLPLP LGLKPPAVDG VITELHRHGI SDVPPAASCA

Best Arabidopsis Sequence Match ( AT2G20570.2 )
(BLAST)

001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKTRLNE QVYNGFVFFL KVDWTPELHR RFVEAVEQLG VDKAVPSRIL
201: ELMGVHCLTR HNVASHLQKY RSHRKHLLAR EAEAANWTRK RHIYGVDTGA NLNGRTKNGW LAPAPTLGFP PPPPVAVAPP PVHHHHFRPL HVWGHPTVDQ
301: SIMPHVWPKH LPPPSTAMPN PPFWVSDSPY WHPMHNGTTP YLPTVATRFR APPVAGIPHA LPPHHTMYKP NLGFGGARPP VDLHPSKESV DAAIGDVLTR
401: PWLPLPLGLN PPAVDGVMTE LHRHGVSEVP PTASCA

Arabidopsis Description

GPRI1GBF's pro-rich region-interacting factor 1 [Source:UniProtKB/TrEMBL;Acc:F4IVF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.