CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22338	Soybean	nucleus	85.49	86.47
VIT_12s0028g03100.t01	Wine grape	nucleus	60.32	64.1
KRH55898	Soybean	nucleus	61.45	63.62
KRH25644	Soybean	nucleus	60.09	61.92
Solyc10g008160.2.1	Tomato	mitochondrion, nucleus	24.94	57.29
PGSC0003DMT400056255	Potato	nucleus	39.68	55.2
PGSC0003DMT400024265	Potato	nucleus	56.24	54.99
GSMUA_Achr2P15250_001	Banana	nucleus	48.75	50.71
GSMUA_Achr7P11040_001	Banana	nucleus	48.75	50.47
GSMUA_Achr10P...	Banana	nucleus	48.53	50.0
AT5G44190.1	Thale cress	nucleus	40.14	45.85
Solyc07g053630.2.1	Tomato	golgi, mitochondrion, nucleus, plastid	56.01	45.49
CDY14913	Canola	nucleus	38.55	44.85
CDX94762	Canola	nucleus	37.87	44.53
AT2G20570.2	Thale cress	nucleus	43.99	44.5
CDY22303	Canola	nucleus	37.64	44.27
Bra036015.1-P	Field mustard	nucleus	36.96	44.05
Bra033726.1-P	Field mustard	nucleus	37.19	43.73
Bra031129.1-P	Field mustard	nucleus	41.04	43.51
Os06t0348800-01	Rice	mitochondrion, plastid	44.67	43.3
Bra036482.1-P	Field mustard	nucleus	42.18	42.86
CDY05773	Canola	nucleus	43.31	42.83
CDX96952	Canola	nucleus	35.37	42.51
TraesCS7B01G251400.1	Wheat	nucleus	44.22	42.48
TraesCS7D01G347500.1	Wheat	nucleus	43.99	42.36
GSMUA_Achr6P05850_001	Banana	nucleus	41.95	42.05
TraesCS7A01G339800.1	Wheat	nucleus	43.76	41.87
HORVU7Hr1G083690.1	Barley	nucleus	43.54	41.83
HORVU0Hr1G010940.1	Barley	nucleus	43.54	41.83
HORVU0Hr1G007770.1	Barley	nucleus	43.54	41.83
CDY31954	Canola	nucleus	41.72	40.89
Zm00001d044785_P001	Maize	nucleus	43.31	40.13
EES02166	Sorghum	nucleus	43.99	39.03
Zm00001d039260_P002	Maize	nucleus	40.59	38.83
EER88132	Sorghum	nucleus	40.59	38.41
TraesCS3D01G168200.2	Wheat	nucleus	42.18	36.98
TraesCS3B01G191600.1	Wheat	nucleus	42.18	36.98
Os01t0239000-02	Rice	nucleus	45.12	36.92
TraesCS3A01G161000.1	Wheat	nucleus	42.4	36.74
HORVU3Hr1G032440.2	Barley	nucleus	41.27	35.97
HORVU3Hr1G032410.2	Barley	nucleus	9.75	20.57
KRH77235	Soybean	nucleus	24.72	19.53
KRH28259	Soybean	nucleus	25.17	19.47
KRH04301	Soybean	nucleus	25.4	19.44
KRH57579	Soybean	nucleus	25.17	19.44
CDX81968	Canola	nucleus	41.5	17.92

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100790591	MapMan:15.5.2.3	EMBL:ACUP02007760	EnsemblPlantsGene:GLYMA_12G206600	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	UniProt:I1LUI9	InterPro:IPR017930	EnsemblPlants:KRH26988
ProteinID:KRH26988	ProteinID:KRH26988.1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR31312	PANTHER:PTHR31312:SF1	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000233C5BD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:36656063..36660454

Molecular Weight (calculated)

48727.5 Da

IEP (calculated)

6.307

GRAVY (calculated)

-0.635

Length

441 amino acids

Sequence
(BLAST)

001: MLAVSPLRST RDEGQGEMME SFSIGTDDFA DLSEGNLLES INFDDLFMGI NDDEDVLPDL EMDPEMLAEF SLSTEESDMA SSSVSVENNN KSADNNNNND
101: GNNIVTTEKQ DEVIVIAANS SSDSGSSRGE EIVSKSDESV VMNPSRKESE KGRKSSNHAA RNNNPQGKRK VKVDWTPELH RRFVQAVEQL GVDKAVPSRI
201: LEIMGIDCLT RHNIASHLQK YRSHRKHLLA REAEAARWSQ RKQLLAAAGV GRGGGSKREV NPWLTPTMGF PPMTSMHHFR PLHVWGHQTM DQSFMHMWPK
301: HPPYLPSPPV WPPQTAPSPP APDPLYWHQH QRAPNAPTRG TPCFPQPLTT TRFGSQTVPG IPPRHAMYQI LDPGIGIPAS QTPPRPLVDF HPSKESIDAA
401: ISDVLSKPWL PLPLGLKAPA LDGVMGELQR QGIPKIPPSY A

Best Arabidopsis Sequence Match ( AT2G20570.1 )
(BLAST)

001: MLALSPATRD GCDGASEFLD TSCGFTIINP EEEEEFPDFA DHGDLLDIID FDDIFGVAGD VLPDLEIDPE ILSGDFSNHM NASSTITTTS DKTDSQGETT
101: KGSSGKGEEV VSKRDDVAAE TVTYDGDSDR KRKYSSSASS KNNRISNNEG KRKVKVDWTP ELHRRFVEAV EQLGVDKAVP SRILELMGVH CLTRHNVASH
201: LQKYRSHRKH LLAREAEAAN WTRKRHIYGV DTGANLNGRT KNGWLAPAPT LGFPPPPPVA VAPPPVHHHH FRPLHVWGHP TVDQSIMPHV WPKHLPPPST
301: AMPNPPFWVS DSPYWHPMHN GTTPYLPTVA TRFRAPPVAG IPHALPPHHT MYKPNLGFGG ARPPVDLHPS KESVDAAIGD VLTRPWLPLP LGLNPPAVDG
401: VMTELHRHGV SEVPPTASCA

Arabidopsis Description

GPRI1GBF's pro-rich region-interacting factor 1 [Source:UniProtKB/TrEMBL;Acc:F4IVF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.