Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G39610.1 | CDX94762 | AT5G44190.1 | 23459204 |
| AT5G39610.1 | CDX96952 | AT5G44190.1 | 23459204 |
| AT5G39610.1 | CDY14913 | AT5G44190.1 | 23459204 |
| AT5G39610.1 | CDY22303 | AT5G44190.1 | 23459204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025658.1-P | Field mustard | nucleus | 97.92 | 97.92 |
| CDX74442 | Canola | nucleus | 97.92 | 97.92 |
| AT5G39610.1 | Thale cress | cytosol | 83.74 | 84.91 |
| CDX67433 | Canola | nucleus | 83.05 | 83.33 |
| CDY37008 | Canola | nucleus | 82.7 | 82.99 |
| CDY66026 | Canola | cytoskeleton, cytosol, nucleus | 59.17 | 66.02 |
| CDY29982 | Canola | cytosol | 39.1 | 65.7 |
| CDX85242 | Canola | cytosol | 68.86 | 61.99 |
| CDX86391 | Canola | cytoskeleton, cytosol, nucleus | 65.05 | 60.84 |
| CDY68680 | Canola | nucleus | 39.1 | 53.81 |
| CDY69936 | Canola | nucleus | 52.25 | 53.36 |
| CDY20001 | Canola | cytoskeleton, cytosol, nucleus | 68.51 | 53.23 |
| CDY64672 | Canola | nucleus | 51.9 | 53.0 |
| CDY70041 | Canola | nucleus | 39.1 | 52.8 |
| Solyc02g088180.2.1 | Tomato | cytosol | 56.4 | 51.1 |
| CDY51707 | Canola | cytosol | 27.68 | 50.63 |
| PGSC0003DMT400003380 | Potato | nucleus | 55.02 | 49.23 |
| CDY14030 | Canola | nucleus | 53.63 | 49.21 |
| CDX92881 | Canola | cytosol | 27.68 | 49.08 |
| CDY40775 | Canola | nucleus | 53.98 | 48.15 |
| CDY56940 | Canola | nucleus | 54.33 | 48.01 |
| CDY42875 | Canola | nucleus | 52.25 | 46.46 |
| CDX75966 | Canola | nucleus | 39.79 | 40.93 |
| CDY51910 | Canola | nucleus | 35.29 | 40.8 |
| CDY20103 | Canola | nucleus | 41.87 | 39.93 |
| CDX75813 | Canola | nucleus | 41.87 | 39.29 |
| CDX82444 | Canola | nucleus | 41.87 | 39.16 |
| CDY51941 | Canola | nucleus | 40.48 | 39.13 |
| CDX70804 | Canola | nucleus | 45.33 | 38.87 |
| CDY51238 | Canola | nucleus | 45.33 | 38.87 |
| CDY32316 | Canola | nucleus | 41.18 | 38.76 |
| CDY69369 | Canola | nucleus | 40.48 | 38.49 |
| CDY67593 | Canola | nucleus | 40.83 | 38.44 |
| CDY18519 | Canola | nucleus | 40.14 | 38.41 |
| CDY53250 | Canola | nucleus | 44.64 | 38.39 |
| CDY02636 | Canola | nucleus | 44.29 | 37.98 |
| CDY42901 | Canola | nucleus | 44.98 | 37.79 |
| CDY50879 | Canola | cytoskeleton, cytosol, nucleus | 44.64 | 37.61 |
| CDY20411 | Canola | cytosol | 41.52 | 37.38 |
| GSMUA_Achr7P11500_001 | Banana | nucleus | 43.94 | 37.35 |
| CDY45986 | Canola | cytosol | 41.18 | 37.19 |
| CDX82566 | Canola | nucleus | 35.29 | 36.82 |
| CDY20314 | Canola | nucleus | 39.45 | 35.96 |
| CDX87602 | Canola | cytosol | 41.52 | 35.82 |
| CDX76817 | Canola | nucleus | 39.1 | 35.65 |
| CDY34773 | Canola | nucleus | 39.1 | 35.65 |
| CDX88273 | Canola | cytosol | 41.52 | 35.61 |
| CDX96262 | Canola | nucleus | 44.98 | 35.42 |
| CDY23558 | Canola | nucleus | 33.56 | 35.4 |
| CDY28805 | Canola | nucleus | 44.64 | 35.15 |
| CDY60115 | Canola | nucleus | 33.91 | 35.13 |
| CDX99695 | Canola | mitochondrion | 31.83 | 33.7 |
| CDX98529 | Canola | mitochondrion | 31.83 | 33.7 |
| CDY42401 | Canola | nucleus | 36.33 | 32.71 |
| CDY10515 | Canola | nucleus | 35.64 | 31.99 |
| CDY35197 | Canola | nucleus | 31.14 | 26.95 |
| CDY14236 | Canola | cytosol | 31.14 | 26.79 |
| CDX97445 | Canola | cytosol | 30.8 | 26.49 |
| CDY38380 | Canola | nucleus | 31.14 | 26.16 |
| CDX92880 | Canola | nucleus | 4.84 | 7.07 |
| CDY51708 | Canola | nucleus | 4.84 | 7.04 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078H095 | UniProt:A0A078H095 | EnsemblPlants:CDY30258 | ProteinID:CDY30258 |
| ProteinID:CDY30258.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00044895001 | InterPro:IPR003441 |
| InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31744 |
| PANTHER:PTHR31744:SF7 | SUPFAM:SSF101941 | UniParc:UPI0004EDBD86 | : | : | : |
Description
BnaC04g31690DBnaC04g31690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H095]
Coordinates
chrLK032251:-:85014..86234
Molecular Weight (calculated)
33066.1 Da
IEP (calculated)
6.514
GRAVY (calculated)
-0.575
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYDASRISE IVEDEEQIDL PPGFRFHPTD EELITHYLKQ KVFNTFFSAT AIGEVDLNKI EPWELPRKAK IGEKEWYFFC VRDRKYPTGL RTNRATEAGY
101: WKATGKDKEI FKGKSLVGMK KTLVFYKGRA PKGVRTNWVM HEYRLEGIYS IQHLSQTAKN DWVICRVFHK RADGTKVDMS HLVLLDSHIN RIEPVGLPSL
201: MDSSQRDSFP GSSTHVTCFS DQETEDKRLI HLESKDGSGP LFYPDPLFLQ DNDSLMKLLL NSHETQFPGT GTDPSGLAGT GESGCFWNF
101: WKATGKDKEI FKGKSLVGMK KTLVFYKGRA PKGVRTNWVM HEYRLEGIYS IQHLSQTAKN DWVICRVFHK RADGTKVDMS HLVLLDSHIN RIEPVGLPSL
201: MDSSQRDSFP GSSTHVTCFS DQETEDKRLI HLESKDGSGP LFYPDPLFLQ DNDSLMKLLL NSHETQFPGT GTDPSGLAGT GESGCFWNF
001: MDYEASRIVE MVEDEEHIDL PPGFRFHPTD EELITHYLKP KVFNTFFSAT AIGEVDLNKI EPWDLPWKAK MGEKEWYFFC VRDRKYPTGL RTNRATEAGY
101: WKATGKDKEI FKGKSLVGMK KTLVFYKGRA PKGVKTNWVM HEYRLEGKYC IENLPQTAKN EWVICRVFQK RADGTKVPMS MLDPHINRME PAGLPSLMDC
201: SQRDSFTGSS SHVTCFSDQE TEDKRLVHES KDGFGSLFYS DPLFLQDNYS LMKLLLDGQE TQFSGKPFDG RDSSGTEELD CVWNF
101: WKATGKDKEI FKGKSLVGMK KTLVFYKGRA PKGVKTNWVM HEYRLEGKYC IENLPQTAKN EWVICRVFQK RADGTKVPMS MLDPHINRME PAGLPSLMDC
201: SQRDSFTGSS SHVTCFSDQE TEDKRLVHES KDGFGSLFYS DPLFLQDNYS LMKLLLDGQE TQFSGKPFDG RDSSGTEELD CVWNF
Arabidopsis Description
NAC92NAC domain-containing protein 92 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKA0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.