Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028685.1-P | Field mustard | nucleus | 94.92 | 95.22 |
| CDY40775 | Canola | nucleus | 96.19 | 93.52 |
| AT5G07680.1 | Thale cress | nucleus | 89.21 | 85.41 |
| CDY69936 | Canola | nucleus | 76.51 | 85.16 |
| CDY64672 | Canola | nucleus | 76.51 | 85.16 |
| CDY56940 | Canola | nucleus | 76.51 | 73.7 |
| CDY42875 | Canola | nucleus | 73.65 | 71.38 |
| CDY29982 | Canola | cytosol | 36.83 | 67.44 |
| CDY66026 | Canola | cytoskeleton, cytosol, nucleus | 47.3 | 57.53 |
| CDY68680 | Canola | nucleus | 37.46 | 56.19 |
| CDY70041 | Canola | nucleus | 37.46 | 55.14 |
| VIT_17s0000g06400.t01 | Wine grape | nucleus | 62.86 | 55.0 |
| CDY51707 | Canola | cytosol | 27.3 | 54.43 |
| KRH03497 | Soybean | nucleus | 59.68 | 53.71 |
| CDY30258 | Canola | nucleus | 49.21 | 53.63 |
| CDX74442 | Canola | nucleus | 49.21 | 53.63 |
| KRH56898 | Soybean | nucleus | 59.37 | 53.43 |
| CDX67433 | Canola | nucleus | 48.25 | 52.78 |
| CDY37008 | Canola | nucleus | 48.25 | 52.78 |
| CDX92881 | Canola | cytosol | 27.3 | 52.76 |
| CDX85242 | Canola | cytosol | 50.48 | 49.53 |
| CDX86391 | Canola | cytoskeleton, cytosol, nucleus | 48.57 | 49.51 |
| CDX75813 | Canola | nucleus | 43.49 | 44.48 |
| CDX82444 | Canola | nucleus | 43.49 | 44.34 |
| CDX75966 | Canola | nucleus | 39.37 | 44.13 |
| CDY02636 | Canola | nucleus | 46.35 | 43.32 |
| CDY20001 | Canola | cytoskeleton, cytosol, nucleus | 51.11 | 43.28 |
| CDY53250 | Canola | nucleus | 46.03 | 43.15 |
| CDY20103 | Canola | nucleus | 41.27 | 42.9 |
| CDY51910 | Canola | nucleus | 33.97 | 42.8 |
| CDY51238 | Canola | nucleus | 45.4 | 42.43 |
| CDX70804 | Canola | nucleus | 45.4 | 42.43 |
| CDY18519 | Canola | nucleus | 40.63 | 42.38 |
| CDY50879 | Canola | cytoskeleton, cytosol, nucleus | 46.03 | 42.27 |
| CDY42901 | Canola | nucleus | 46.03 | 42.15 |
| CDY51941 | Canola | nucleus | 40.0 | 42.14 |
| CDY32316 | Canola | nucleus | 40.95 | 42.02 |
| CDY69369 | Canola | nucleus | 40.32 | 41.78 |
| CDY67593 | Canola | nucleus | 40.63 | 41.69 |
| CDY20314 | Canola | nucleus | 41.9 | 41.64 |
| CDX76817 | Canola | nucleus | 41.27 | 41.01 |
| CDY34773 | Canola | nucleus | 41.27 | 41.01 |
| CDY60115 | Canola | nucleus | 34.92 | 39.43 |
| CDX82566 | Canola | nucleus | 34.6 | 39.35 |
| CDY20411 | Canola | cytosol | 39.68 | 38.94 |
| CDY45986 | Canola | cytosol | 39.37 | 38.75 |
| CDX96262 | Canola | nucleus | 44.76 | 38.42 |
| CDY23558 | Canola | nucleus | 33.33 | 38.32 |
| CDX87602 | Canola | cytosol | 40.32 | 37.91 |
| CDY28805 | Canola | nucleus | 44.13 | 37.87 |
| CDX88273 | Canola | cytosol | 40.32 | 37.69 |
| CDX99695 | Canola | mitochondrion | 32.38 | 37.36 |
| CDX98529 | Canola | mitochondrion | 32.38 | 37.36 |
| CDY42401 | Canola | nucleus | 35.87 | 35.2 |
| CDY10515 | Canola | nucleus | 35.87 | 35.09 |
| CDY14236 | Canola | cytosol | 31.11 | 29.17 |
| CDX97445 | Canola | cytosol | 31.11 | 29.17 |
| CDY35197 | Canola | nucleus | 30.79 | 29.04 |
| CDY38380 | Canola | nucleus | 30.48 | 27.91 |
| CDY51708 | Canola | nucleus | 5.4 | 8.54 |
| CDX92880 | Canola | nucleus | 5.08 | 8.08 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078FHY6 | UniProt:A0A078FHY6 | EnsemblPlants:CDY14030 | ProteinID:CDY14030 |
| ProteinID:CDY14030.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00078555001 | InterPro:IPR003441 |
| InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31744 |
| PANTHER:PTHR31744:SF7 | SUPFAM:SSF101941 | UniParc:UPI0004EE71A8 | : | : | : |
Description
BnaC02g01470DBnaC02g01470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FHY6]
Coordinates
chrLK032040:-:61827..63054
Molecular Weight (calculated)
35902.4 Da
IEP (calculated)
8.983
GRAVY (calculated)
-0.709
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: METFGGFHKE DDEQMVLPPG FRFHPTDEEL ITHYLHNKVL NIDFSAKAIG EVDLNKAEPW ELPYKAKMGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA
101: TGKDKEIFRG KSLVGMKKTL VFYRGRAPKG QKTNWVMHEY RLDGKLSPHN LPKTAKNEWV ICRVFHKTAG GKKIPISTLM QIGSYGGCSL PPLTDSSPYN
201: NDKTKNEPTY VPCFSNQTET RGTLLNYFSN NPALSSIPLY QPHSLHVSDP VLAQEQSVSQ GMFENNRRQS FKTLSISQET GVSNTDIEFG RKAFDHQEVP
301: SSSTGPVDLE PFWSY
101: TGKDKEIFRG KSLVGMKKTL VFYRGRAPKG QKTNWVMHEY RLDGKLSPHN LPKTAKNEWV ICRVFHKTAG GKKIPISTLM QIGSYGGCSL PPLTDSSPYN
201: NDKTKNEPTY VPCFSNQTET RGTLLNYFSN NPALSSIPLY QPHSLHVSDP VLAQEQSVSQ GMFENNRRQS FKTLSISQET GVSNTDIEFG RKAFDHQEVP
301: SSSTGPVDLE PFWSY
001: METFGVFHKE DDEQMDLPPG FRFHPTDEEL ITHYLHKKVL DLGFSAKAIG EVDLNKAEPW ELPYKAKIGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA
101: TGKDKEIFRG KSLVGMKKTL VFYRGRAPKG QKTNWVMHEY RLDGKLSAHN LPKTAKNEWV ICRVFHKTAG GKKIPISTLI RIGSYGTGSS LPPLTDSSPY
201: NDKTKTEPVY VPCFSNQAET RGTILNCFSN PSLSSIQPDF LQMIPLYQPQ SLNISESSNP VLTQEQSVLQ AMMENNRRQN FKTLSISQET GVSNTDNSSV
301: FEFGRKRFDH QEVPSPSSGP VDLEPFWNY
101: TGKDKEIFRG KSLVGMKKTL VFYRGRAPKG QKTNWVMHEY RLDGKLSAHN LPKTAKNEWV ICRVFHKTAG GKKIPISTLI RIGSYGTGSS LPPLTDSSPY
201: NDKTKTEPVY VPCFSNQAET RGTILNCFSN PSLSSIQPDF LQMIPLYQPQ SLNISESSNP VLTQEQSVLQ AMMENNRRQN FKTLSISQET GVSNTDNSSV
301: FEFGRKRFDH QEVPSPSSGP VDLEPFWNY
Arabidopsis Description
NAC079NAC4 [Source:UniProtKB/TrEMBL;Acc:A0A178UL34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.