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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • cytoskeleton 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytoskeleton, cytosol, nucleus
Any Predictor:cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX77337
CDY70592

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G29035.1 CDX77337 AT2G47450.1 21798944
AT3G29035.1 CDY70592 AT2G47450.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra025374.1-P Field mustard cytoskeleton, cytosol, nucleus 100.0 100.0
CDX85242 Canola cytosol 92.23 88.78
CDY66026 Canola cytoskeleton, cytosol, nucleus 62.46 74.52
AT3G29035.1 Thale cress nucleus 69.26 67.3
CDY20001 Canola cytoskeleton, cytosol, nucleus 78.96 65.59
CDY30258 Canola nucleus 60.84 65.05
CDX74442 Canola nucleus 60.19 64.36
CDX67433 Canola nucleus 59.87 64.24
CDY29982 Canola cytosol 35.6 63.95
CDY37008 Canola nucleus 59.22 63.54
Solyc02g088180.2.1 Tomato cytosol 54.69 52.98
CDY64672 Canola nucleus 48.22 52.65
CDY69936 Canola nucleus 48.22 52.65
CDY68680 Canola nucleus 35.6 52.38
CDY70041 Canola nucleus 35.92 51.87
PGSC0003DMT400003380 Potato nucleus 54.05 51.7
CDY51707 Canola cytosol 25.24 49.37
CDY14030 Canola nucleus 49.51 48.57
CDX92881 Canola cytosol 25.24 47.85
CDY40775 Canola nucleus 49.84 47.53
CDY56940 Canola nucleus 49.84 47.09
CDY42875 Canola nucleus 47.57 45.23
CDX75966 Canola nucleus 35.92 39.5
CDY51910 Canola nucleus 31.07 38.4
CDY20103 Canola nucleus 37.54 38.28
CDX70804 Canola nucleus 41.42 37.98
CDY51238 Canola nucleus 41.42 37.98
CDY02636 Canola nucleus 41.42 37.98
CDY69369 Canola nucleus 37.22 37.83
CDY53250 Canola nucleus 41.1 37.8
CDY32316 Canola nucleus 37.54 37.78
CDY18519 Canola nucleus 36.89 37.75
CDX75813 Canola nucleus 37.54 37.66
CDX82444 Canola nucleus 37.54 37.54
CDY20314 Canola nucleus 38.19 37.22
CDY51941 Canola nucleus 35.92 37.12
CDY67593 Canola nucleus 36.57 36.81
CDY50879 Canola cytoskeleton, cytosol, nucleus 40.45 36.44
CDX76817 Canola nucleus 37.22 36.28
CDY34773 Canola nucleus 36.89 35.96
CDY42901 Canola nucleus 39.81 35.76
GSMUA_Achr7P11500_001 Banana nucleus 38.84 35.29
CDX82566 Canola nucleus 31.39 35.02
CDX96262 Canola nucleus 41.42 34.88
CDY60115 Canola nucleus 31.39 34.77
CDY28805 Canola nucleus 41.1 34.6
CDY20411 Canola cytosol 35.92 34.58
CDY45986 Canola cytosol 35.6 34.38
CDY23558 Canola nucleus 30.42 34.31
CDX87602 Canola cytosol 36.57 33.73
CDX88273 Canola cytosol 36.57 33.53
CDX99695 Canola mitochondrion 28.48 32.23
CDX98529 Canola mitochondrion 28.48 32.23
CDY42401 Canola nucleus 32.36 31.15
CDY10515 Canola nucleus 32.04 30.75
CDY35197 Canola nucleus 29.45 27.25
CDY14236 Canola cytosol 29.45 27.08
CDX97445 Canola cytosol 29.45 27.08
CDY38380 Canola nucleus 29.45 26.45
CDX92880 Canola nucleus 4.21 6.57
CDY51708 Canola nucleus 4.21 6.53
Protein Annotations
MapMan:15.5.17Gene3D:3.30.310.150GO:A0A078DAU2EnsemblPlants:CDX86391ProteinID:CDX86391ProteinID:CDX86391.1
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0006139GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00144521001InterPro:IPR003441
InterPro:IPR036093InterPro:NAC-domInterPro:NAC_dom_sfPFAM:PF02365PFscan:PS51005PANTHER:PTHR31744
PANTHER:PTHR31744:SF7SUPFAM:SSF101941UniParc:UPI000253FAE5:::
Description
BnaA06g31080D
Coordinates
chrLK031845:-:1298320..1299788
Molecular Weight (calculated)
34938.5 Da
IEP (calculated)
5.650
GRAVY (calculated)
-0.408
Length
309 amino acids
Sequence
(BLAST)
001: MDYEVSRTGE IIEDSEQIDL LPGFRFHPTD EELISHYLRP KVLNTVFSAV AIGEVDLNKV EPWDLPWKAK IGEKEWYFFC VRDRKYPTGL RTNRATRAGY
101: WKATGKDKEI FKEKALVGMK KTLVFYEGRA PKGVKTNWVI HEYRLDGIYA NDNLPVTAKN EWVISRVFQK GADGKKMHLY GLTMLGSGIN QVEPAGLPPL
201: SNVTCFSDQT IVEDKSHISE LKDECNVTML GSSSTHSIPN IGSMLYSDPV FMQDNSSILM MLLDSEETQF KKNIQGFGTA EKELTTSSWH DHGLAGSAGS
301: VEVDCYWNF
Best Arabidopsis Sequence Match ( AT3G29035.1 )
(BLAST)
001: MDYKVSRSGE IVEGEVEDSE KIDLPPGFRF HPTDEELITH YLRPKVVNSF FSAIAIGEVD LNKVEPWDLP WKAKLGEKEW YFFCVRDRKY PTGLRTNRAT
101: KAGYWKATGK DKEIFKGKSL VGMKKTLVFY KGRAPKGVKT NWVMHEYRLE GKFAIDNLSK TAKNECVISR VFHTRTDGTK EHMSVGLPPL MDSSPYLKSR
201: GQDSLAGTTL GGLLSHVTYF SDQTTDDKSL VADFKTTMFG SGSTNFLPNI GSLLDFDPLF LQNNSSVLKM LLDNEETQFK KNLHNSGSSE SELTASSWQG
301: HNSYGSTGPV NLDCVWKF
Arabidopsis Description
NAC59NAC domain-containing protein 59 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJW3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.