Factsheet for GSMUA_Achr7P11500_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P15250_001
GSMUA_Achr6P05850_001
GSMUA_Achr7P11040_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39610.1	GSMUA_Achr10P...	AT5G44190.1	23459204
AT5G39610.1	GSMUA_Achr2P15250_001	AT5G44190.1	23459204
AT5G39610.1	GSMUA_Achr6P05850_001	AT5G44190.1	23459204
AT5G39610.1	GSMUA_Achr7P11040_001	AT5G44190.1	23459204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P00570_001	Banana	nucleus	26.76	54.17
AT5G39610.1	Thale cress	cytosol	38.82	46.32
GSMUA_Achr10P...	Banana	cytosol	30.88	46.05
Bra028435.1-P	Field mustard	nucleus	37.94	44.79
CDX67433	Canola	nucleus	37.94	44.79
GSMUA_Achr5P07600_001	Banana	cytosol	32.06	44.31
GSMUA_Achr6P01770_001	Banana	cytosol, mitochondrion, nucleus	30.0	44.16
CDY37008	Canola	nucleus	37.35	44.1
CDY66026	Canola	cytoskeleton, cytosol, nucleus	33.53	44.02
CDX74442	Canola	nucleus	37.35	43.94
Bra025658.1-P	Field mustard	nucleus	37.35	43.94
CDY30258	Canola	nucleus	37.35	43.94
GSMUA_Achr9P10210_001	Banana	nucleus	29.41	41.49
GSMUA_Achr6P30570_001	Banana	cytosol, nucleus, plastid	39.41	41.23
AT3G29035.1	Thale cress	nucleus	38.24	40.88
GSMUA_Achr9P16920_001	Banana	cytosol	36.47	40.52
Solyc02g088180.2.1	Tomato	cytosol	37.65	40.13
GSMUA_Achr9P27530_001	Banana	nucleus	38.82	39.76
PGSC0003DMT400003380	Potato	nucleus	37.65	39.63
GSMUA_Achr3P18020_001	Banana	nucleus	33.82	39.25
GSMUA_Achr11P...	Banana	nucleus	32.06	39.07
Bra025374.1-P	Field mustard	cytoskeleton, cytosol, nucleus	35.29	38.84
CDX86391	Canola	cytoskeleton, cytosol, nucleus	35.29	38.84
GSMUA_Achr7P18330_001	Banana	nucleus	35.0	38.64
CDX85242	Canola	cytosol	35.88	38.01
GSMUA_Achr6P30050_001	Banana	nucleus	31.76	37.89
Bra036223.1-P	Field mustard	nucleus	36.47	37.8
GSMUA_Achr6P31350_001	Banana	nucleus	32.94	37.58
GSMUA_Achr6P32290_001	Banana	nucleus	38.24	37.57
GSMUA_Achr8P18420_001	Banana	nucleus	31.47	37.15
GSMUA_Achr3P09520_001	Banana	cytosol	34.71	37.11
GSMUA_Achr6P08600_001	Banana	nucleus	37.65	36.89
GSMUA_Achr3P23360_001	Banana	nucleus	30.29	36.79
GSMUA_Achr11P...	Banana	nucleus	28.24	36.64
GSMUA_Achr5P00500_001	Banana	nucleus	29.41	36.5
GSMUA_Achr5P18670_001	Banana	nucleus	28.82	35.9
GSMUA_Achr10P...	Banana	nucleus	34.71	35.54
GSMUA_Achr5P26640_001	Banana	nucleus	31.18	35.45
GSMUA_Achr8P33310_001	Banana	nucleus	29.41	35.34
GSMUA_AchrUn_...	Banana	nucleus	26.47	35.02
GSMUA_Achr9P26140_001	Banana	cytosol	32.35	34.92
GSMUA_Achr10P...	Banana	cytosol	36.18	34.65
GSMUA_Achr10P...	Banana	nucleus	33.24	34.45
GSMUA_Achr11P...	Banana	nucleus	27.94	34.17
GSMUA_Achr6P36550_001	Banana	nucleus	27.94	34.17
GSMUA_Achr8P18980_001	Banana	nucleus	27.35	34.07
GSMUA_Achr8P07120_001	Banana	nucleus	30.0	33.89
GSMUA_Achr9P20090_001	Banana	cytosol	31.47	33.75
GSMUA_Achr7P19680_001	Banana	cytosol, mitochondrion, nucleus	32.35	33.64
GSMUA_Achr8P24680_001	Banana	cytosol	31.18	33.44
GSMUA_AchrUn_...	Banana	nucleus	27.94	32.76
CDY20001	Canola	cytoskeleton, cytosol, nucleus	35.59	32.53
GSMUA_Achr1P20530_001	Banana	cytosol, nucleus, plastid	26.18	32.13
GSMUA_Achr1P10860_001	Banana	nucleus	26.76	31.27
GSMUA_Achr8P21470_001	Banana	nucleus	36.18	23.84

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr7G11500_001
EnsemblPlants:GSMUA_Achr7P11500_001	EnsemblPlants:GSMUA_Achr7T11500_001	InterPro:IPR003441	InterPro:IPR036093	UniProt:M0TGN8	InterPro:NAC-dom
InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31744	PANTHER:PTHR31744:SF7	SUPFAM:SSF101941
UniParc:UPI000295ADA7	SEG:seg	:	:	:	:

Description

no apical meristem protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G11500_001]

Coordinates

chr7:-:9187183..9189903

Molecular Weight (calculated)

38622.9 Da

IEP (calculated)

7.613

GRAVY (calculated)

-0.500

Length

340 amino acids

Sequence
(BLAST)

001: MLRLMIEAGE MFLPPGFRFH PTDEELITHY LAPKVAGTSF CATVIGELDL NKREPWDLPC DTKVGDEWYF FCTKDRKYPT GLRTNRATDS GHWKATGKDK
101: EIHRRRNLIG LKKTLVFYKG RAPKGEKTNW VMHEYRLEGN QSNTVQNAWV ICRVFCRRSG EKQDMQWFED ELRSSVPVLS ANDHKKNKDG FSSASNSTHV
201: TCFSDGLVGL RGSEELAKPS QNAIMVPLSL SSNATSPATS NLVDLHHRGD SSVQLSESYG RGNDKNLKME EEALSISEET GLITNMAPDI YTSIRSNFNY
301: QELLPDAERL DVLYHALCHQ KIFVKSFPRH IILLHLISLL

Best Arabidopsis Sequence Match ( AT3G29035.1 )
(BLAST)

001: MDYKVSRSGE IVEGEVEDSE KIDLPPGFRF HPTDEELITH YLRPKVVNSF FSAIAIGEVD LNKVEPWDLP WKAKLGEKEW YFFCVRDRKY PTGLRTNRAT
101: KAGYWKATGK DKEIFKGKSL VGMKKTLVFY KGRAPKGVKT NWVMHEYRLE GKFAIDNLSK TAKNECVISR VFHTRTDGTK EHMSVGLPPL MDSSPYLKSR
201: GQDSLAGTTL GGLLSHVTYF SDQTTDDKSL VADFKTTMFG SGSTNFLPNI GSLLDFDPLF LQNNSSVLKM LLDNEETQFK KNLHNSGSSE SELTASSWQG
301: HNSYGSTGPV NLDCVWKF

Arabidopsis Description

NAC59NAC domain-containing protein 59 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJW3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.