Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra014106.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G29035.1 | Bra014106.1-P | AT2G47450.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20001 | Canola | cytoskeleton, cytosol, nucleus | 97.56 | 86.02 |
| Bra025374.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 75.91 | 80.58 |
| AT3G29035.1 | Thale cress | nucleus | 71.95 | 74.21 |
| Bra025658.1-P | Field mustard | nucleus | 61.28 | 69.55 |
| Bra028435.1-P | Field mustard | nucleus | 59.45 | 67.71 |
| Solyc02g088180.2.1 | Tomato | cytosol | 54.88 | 56.43 |
| PGSC0003DMT400003380 | Potato | nucleus | 54.27 | 55.11 |
| Bra009246.1-P | Field mustard | nucleus | 47.26 | 54.77 |
| Bra028685.1-P | Field mustard | nucleus | 49.39 | 51.59 |
| Bra012960.1-P | Field mustard | nucleus | 50.91 | 51.07 |
| Bra029313.1-P | Field mustard | nucleus | 49.09 | 49.54 |
| Bra001586.1-P | Field mustard | nucleus | 37.2 | 39.48 |
| Bra037585.1-P | Field mustard | nucleus | 35.98 | 39.33 |
| Bra021592.1-P | Field mustard | nucleus | 36.28 | 39.27 |
| Bra001705.1-P | Field mustard | nucleus | 35.67 | 39.13 |
| Bra022319.1-P | Field mustard | nucleus | 35.98 | 38.44 |
| Bra006449.1-P | Field mustard | nucleus | 39.33 | 38.39 |
| Bra023669.1-P | Field mustard | nucleus | 39.02 | 38.1 |
| Bra002148.1-P | Field mustard | nucleus | 39.02 | 38.1 |
| Bra032095.1-P | Field mustard | nucleus | 36.28 | 37.54 |
| Bra003023.1-P | Field mustard | nucleus | 40.85 | 37.53 |
| Bra040153.1-P | Field mustard | nucleus | 39.02 | 37.32 |
| Bra008259.1-P | Field mustard | cytosol | 36.28 | 37.19 |
| Bra031950.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 38.41 | 36.63 |
| Bra007855.1-P | Field mustard | nucleus | 35.37 | 36.59 |
| GSMUA_Achr7P11500_001 | Banana | nucleus | 37.8 | 36.47 |
| Bra022685.1-P | Field mustard | nucleus | 40.55 | 36.24 |
| Bra015750.1-P | Field mustard | cytosol | 36.89 | 36.12 |
| Bra034713.1-P | Field mustard | nucleus | 30.18 | 36.0 |
| Bra001480.1-P | Field mustard | nucleus | 30.18 | 35.74 |
| Bra030820.1-P | Field mustard | nucleus | 32.32 | 33.02 |
| Bra010362.1-P | Field mustard | nucleus | 27.74 | 26.22 |
| Bra011037.1-P | Field mustard | nucleus | 27.44 | 26.16 |
| Bra024194.1-P | Field mustard | nucleus | 26.83 | 25.07 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | EnsemblPlantsGene:Bra036223 | EnsemblPlants:Bra036223.1 | EnsemblPlants:Bra036223.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003441 | InterPro:IPR036093 | UniProt:M4F567 | InterPro:NAC-dom |
| InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31744 | PANTHER:PTHR31744:SF7 | SUPFAM:SSF101941 |
| UniParc:UPI0002541DDC | : | : | : | : | : |
Description
AT5G39610 (E=4e-094) ATNAC2, ORE1, ANAC092, ATNAC6 | ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6); protein heterodimerization/ protein homodimerization/ transcription factor
Coordinates
chrA09:+:2116608..2117965
Molecular Weight (calculated)
37330.3 Da
IEP (calculated)
6.440
GRAVY (calculated)
-0.545
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGEVSRTWE ITEDSEQIDL PPGFRFHPTD EELISYYLRP KVLNTFFSAI AIGEVDLNKV EPWDLPWKAK IGEKEWYFFC VRDRKYPTGL RTNRATKAGY
101: WKATGKDKEI FKEKCIVGMK KTLVFYKGRA PKGVKTNWVM HEYRLEGKYA IDNNPKTAKN EWVISRIFQK HADGKKMHIS SLMKLGSGIN HIEPVGLPPL
201: MDSSPYLKSG GGDTFAGSLS HVTCFSDQTT EDKSHLSESR DECNFTMFGS SSTHLMIPNI GSILHSDPMI MQDNSPILKI MLDSEETQFK KDLQDFSTSE
301: NELTASSWHG HDISGSAAPV EMDCFWNF
101: WKATGKDKEI FKEKCIVGMK KTLVFYKGRA PKGVKTNWVM HEYRLEGKYA IDNNPKTAKN EWVISRIFQK HADGKKMHIS SLMKLGSGIN HIEPVGLPPL
201: MDSSPYLKSG GGDTFAGSLS HVTCFSDQTT EDKSHLSESR DECNFTMFGS SSTHLMIPNI GSILHSDPMI MQDNSPILKI MLDSEETQFK KDLQDFSTSE
301: NELTASSWHG HDISGSAAPV EMDCFWNF
001: MDYKVSRSGE IVEGEVEDSE KIDLPPGFRF HPTDEELITH YLRPKVVNSF FSAIAIGEVD LNKVEPWDLP WKAKLGEKEW YFFCVRDRKY PTGLRTNRAT
101: KAGYWKATGK DKEIFKGKSL VGMKKTLVFY KGRAPKGVKT NWVMHEYRLE GKFAIDNLSK TAKNECVISR VFHTRTDGTK EHMSVGLPPL MDSSPYLKSR
201: GQDSLAGTTL GGLLSHVTYF SDQTTDDKSL VADFKTTMFG SGSTNFLPNI GSLLDFDPLF LQNNSSVLKM LLDNEETQFK KNLHNSGSSE SELTASSWQG
301: HNSYGSTGPV NLDCVWKF
101: KAGYWKATGK DKEIFKGKSL VGMKKTLVFY KGRAPKGVKT NWVMHEYRLE GKFAIDNLSK TAKNECVISR VFHTRTDGTK EHMSVGLPPL MDSSPYLKSR
201: GQDSLAGTTL GGLLSHVTYF SDQTTDDKSL VADFKTTMFG SGSTNFLPNI GSLLDFDPLF LQNNSSVLKM LLDNEETQFK KNLHNSGSSE SELTASSWQG
301: HNSYGSTGPV NLDCVWKF
Arabidopsis Description
NAC59NAC domain-containing protein 59 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJW3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.