Factsheet for Bra003023.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra035381.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53950.1	Bra035381.1-P	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022685.1-P	Field mustard	nucleus	89.64	87.19
AT5G53950.1	Thale cress	nucleus	85.71	81.6
Solyc07g062840.2.1	Tomato	nucleus	53.5	54.26
KRH22042	Soybean	nucleus	53.5	54.26
KRH27280	Soybean	nucleus	52.1	54.23
VIT_19s0014g02200.t01	Wine grape	nucleus	54.62	53.72
KRH26232	Soybean	nucleus	52.38	51.09
PGSC0003DMT400032280	Potato	nucleus	40.62	50.52
KRH55187	Soybean	nucleus	52.94	50.4
Bra009246.1-P	Field mustard	nucleus	38.1	48.06
Bra001586.1-P	Field mustard	nucleus	41.18	47.57
GSMUA_Achr10P...	Banana	nucleus	43.7	46.99
Bra021592.1-P	Field mustard	nucleus	39.22	46.2
Bra037585.1-P	Field mustard	nucleus	38.38	45.67
Bra001705.1-P	Field mustard	nucleus	37.53	44.82
Bra028435.1-P	Field mustard	nucleus	36.13	44.79
Bra025658.1-P	Field mustard	nucleus	36.13	44.64
Bra028685.1-P	Field mustard	nucleus	39.22	44.59
Bra022319.1-P	Field mustard	nucleus	38.1	44.3
Zm00001d035266_P001	Maize	nucleus	43.98	43.98
Bra012960.1-P	Field mustard	nucleus	39.22	42.81
Bra029313.1-P	Field mustard	nucleus	38.66	42.46
Bra032095.1-P	Field mustard	nucleus	37.25	41.96
Os06t0344900-00	Rice	cytosol, nucleus, plastid	43.7	41.82
Bra007855.1-P	Field mustard	nucleus	36.97	41.64
Bra025374.1-P	Field mustard	cytoskeleton, cytosol, nucleus	35.57	41.1
Bra036223.1-P	Field mustard	nucleus	37.53	40.85
TraesCS7A01G334800.1	Wheat	nucleus	40.9	40.22
TraesCS7B01G246300.1	Wheat	nucleus	40.62	40.06
TraesCS7D01G342300.1	Wheat	nucleus	40.62	40.06
Zm00001d041791_P001	Maize	nucleus	40.62	39.4
Bra008259.1-P	Field mustard	cytosol	35.01	39.06
Bra002148.1-P	Field mustard	nucleus	36.69	38.99
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	36.97	38.37
Bra023669.1-P	Field mustard	nucleus	35.85	38.1
Bra006449.1-P	Field mustard	nucleus	35.57	37.8
Bra015750.1-P	Field mustard	cytosol	35.29	37.61
HORVU7Hr1G082420.2	Barley	nucleus	40.62	36.99
Bra040153.1-P	Field mustard	nucleus	35.29	36.73
Bra001480.1-P	Field mustard	nucleus	27.73	35.74
Bra034713.1-P	Field mustard	nucleus	27.17	35.27
KXG23228	Sorghum	plastid	43.42	34.91
Bra030820.1-P	Field mustard	nucleus	29.69	33.02
Bra024194.1-P	Field mustard	nucleus	27.17	27.64
Bra011037.1-P	Field mustard	nucleus	26.61	27.62
Bra010362.1-P	Field mustard	nucleus	26.61	27.38

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	EnsemblPlantsGene:Bra003023	EnsemblPlants:Bra003023.1	EnsemblPlants:Bra003023.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	UniProt:M4CFP1	InterPro:NAC-dom
InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31744	PANTHER:PTHR31744:SF22	SUPFAM:SSF101941
UniParc:UPI0002543CDC	SEG:seg	:	:	:	:

Description

AT5G53950 (E=1e-155) CUC2, ANAC098 | CUC2 (CUP-SHAPED COTYLEDON 2); transcription factor

Coordinates

chrA10:-:5979597..5981539

Molecular Weight (calculated)

39782.5 Da

IEP (calculated)

8.599

GRAVY (calculated)

-0.561

Length

357 amino acids

Sequence
(BLAST)

001: MDIPLYHYDH GGDSQYLPPG FRFHPTDEEL ITHYLLRKVL DGCFSSRAIA DVDLNKCEPW QLPGKAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA
101: TGKDREIYSS KTCALVGMKK TLVFYKGRAP KGEKTNWVMH EYRLEGKFSY HLISRSSKDE WVISRVFKKT GLANTGASGG EASASVSSCT GGSKKTKVPS
201: TISTNYREQP SSPSSVSLPP LFDPTTTLGY TDSCYSYNSR SSNTTLTATA ITEHVSCLDV NVDSFNHLLP PAPPGFDHFS RFVSRNVSTL SNIRSFQENF
301: NHFPYFGSSS ASTMTPSVNL PSSHGGTGMN YWLQTTAEEN ETKAGLLNGG LDCVWNY

Best Arabidopsis Sequence Match ( AT5G53950.1 )
(BLAST)

001: MDIPYYHYDH GGDSQYLPPG FRFHPTDEEL ITHYLLRKVL DGCFSSRAIA EVDLNKCEPW QLPGRAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA
101: TGKDREIFSS KTCALVGMKK TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLASTGAVSE GGGGGGATVS VSSGTGPSKK
201: TKVPSTISRN YQEQPSSPSS VSLPPLLDPT TTLGYTDSSC SYDSRSTNTT VTASAITEHV SCFSTVPTTT TALGLDVNSF SRLPPPLGFD FDPFPRFVSR
301: NVSTQSNFRS FQENFNQFPY FGSSSASTMT SAVNLPSFQG GGGVSGMNYW LPATAEENES KVGVLHAGLD CIWNY

Arabidopsis Description

NAC098Protein CUP-SHAPED COTYLEDON 2 [Source:UniProtKB/Swiss-Prot;Acc:O04017]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.