Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53950.1 | KRH14106 | AT5G35750.1 | 18642946 |
| AT5G53950.1 | KRH74010 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH26232 | Soybean | nucleus | 90.13 | 92.35 |
| KRH27280 | Soybean | nucleus | 62.13 | 67.93 |
| KRH22042 | Soybean | nucleus | 61.6 | 65.62 |
| VIT_19s0014g02200.t01 | Wine grape | nucleus | 62.4 | 64.46 |
| Solyc07g062840.2.1 | Tomato | nucleus | 57.87 | 61.65 |
| PGSC0003DMT400032280 | Potato | nucleus | 43.47 | 56.79 |
| GSMUA_Achr10P... | Banana | nucleus | 48.53 | 54.82 |
| Bra003023.1-P | Field mustard | nucleus | 50.4 | 52.94 |
| AT5G53950.1 | Thale cress | nucleus | 52.8 | 52.8 |
| CDX96262 | Canola | nucleus | 51.47 | 52.59 |
| CDY28805 | Canola | nucleus | 51.2 | 52.32 |
| Bra022685.1-P | Field mustard | nucleus | 51.2 | 52.32 |
| AT3G15170.1 | Thale cress | nucleus | 41.33 | 50.0 |
| CDY20103 | Canola | nucleus | 40.27 | 49.84 |
| Bra021592.1-P | Field mustard | nucleus | 40.27 | 49.84 |
| CDY32316 | Canola | nucleus | 40.53 | 49.51 |
| CDX75813 | Canola | nucleus | 40.53 | 49.35 |
| CDX82444 | Canola | nucleus | 40.53 | 49.19 |
| Bra001586.1-P | Field mustard | nucleus | 40.53 | 49.19 |
| Zm00001d035266_P001 | Maize | nucleus | 46.4 | 48.74 |
| Os06t0344900-00 | Rice | cytosol, nucleus, plastid | 45.07 | 45.31 |
| KRH41635 | Soybean | nucleus | 37.6 | 45.05 |
| KRH60340 | Soybean | nucleus | 38.4 | 44.86 |
| KRH48487 | Soybean | nucleus | 38.67 | 44.75 |
| TraesCS7D01G342300.1 | Wheat | nucleus | 42.93 | 44.48 |
| TraesCS7B01G246300.1 | Wheat | nucleus | 42.67 | 44.2 |
| TraesCS7A01G334800.1 | Wheat | nucleus | 42.67 | 44.08 |
| CDX99695 | Canola | mitochondrion | 32.0 | 43.96 |
| CDX98529 | Canola | mitochondrion | 32.0 | 43.96 |
| Zm00001d041791_P001 | Maize | nucleus | 42.67 | 43.48 |
| KRH39185 | Soybean | nucleus | 38.13 | 43.2 |
| KRH03497 | Soybean | nucleus | 40.27 | 43.14 |
| KRH56898 | Soybean | nucleus | 40.27 | 43.14 |
| HORVU7Hr1G082420.2 | Barley | nucleus | 42.4 | 40.56 |
| KRH13649 | Soybean | nucleus | 32.53 | 40.26 |
| KRH61984 | Soybean | nucleus | 37.33 | 39.22 |
| KRH43817 | Soybean | nucleus | 31.47 | 39.07 |
| KRH54575 | Soybean | nucleus | 37.07 | 38.94 |
| KRH52643 | Soybean | cytoskeleton, cytosol, nucleus | 36.8 | 38.87 |
| KRH16201 | Soybean | cytoskeleton, cytosol, nucleus | 38.4 | 38.61 |
| KXG23228 | Sorghum | plastid | 45.6 | 38.51 |
| KRG93561 | Soybean | nucleus | 36.8 | 38.12 |
| KRH63309 | Soybean | nucleus | 35.73 | 37.53 |
| KRH40061 | Soybean | nucleus | 36.0 | 37.19 |
| KRH18465 | Soybean | nucleus | 35.2 | 36.87 |
| KRH60880 | Soybean | nucleus | 34.13 | 36.57 |
| KRG94783 | Soybean | nucleus | 39.2 | 36.3 |
| KRH06738 | Soybean | nucleus | 38.93 | 35.87 |
| KRH01200 | Soybean | mitochondrion, nucleus | 35.2 | 34.02 |
| KRH32193 | Soybean | cytosol, nucleus, plastid | 26.4 | 33.45 |
| KRH51562 | Soybean | nucleus | 33.33 | 33.42 |
| KRH70130 | Soybean | nucleus | 36.53 | 33.41 |
| KRG95684 | Soybean | cytosol, nucleus, peroxisome | 26.13 | 33.33 |
| KRH67403 | Soybean | cytosol, nucleus, plastid | 26.13 | 33.11 |
| KRH08479 | Soybean | nucleus | 36.0 | 32.93 |
Protein Annotations
| EntrezGene:100788671 | MapMan:15.5.17 | Gene3D:3.30.310.150 | EMBL:ACUP02003922 | EnsemblPlantsGene:GLYMA_06G236000 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | UniProt:I1KDQ9 | InterPro:IPR003441 | InterPro:IPR036093 | EnsemblPlants:KRH55187 |
| ProteinID:KRH55187 | ProteinID:KRH55187.1 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 |
| PANTHER:PTHR31744 | PANTHER:PTHR31744:SF22 | SUPFAM:SSF101941 | UniParc:UPI000233A2AF | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr6:+:38358421..38360969
Molecular Weight (calculated)
41601.5 Da
IEP (calculated)
7.213
GRAVY (calculated)
-0.559
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNYYHQHHH PHFDNSNNNE PHLPPGFRFH PTDEELITYY LLKKVLDSSF TGRAIVEVDL NKCEPWELPE KAKMGEKEWY FYSLRDRKYP TGLRTNRATE
101: AGYWKATGKD REIYSSKTCS LVGMKKTLVF YRGRAPKGEK SNWVMHEYRL EGKFAYHYLS RSSKDEWVIS RVFQKNTTGG GSTVSAAAAA TSGGSSKKTR
201: MTTSNTSSNM SLCPEPGSPS SIYLPPLLES SPYAAASTTT ATPAAAAFND HESCSFNSAV SNNNQREHVS CFSTISAAAF DHLVPPPEPP LDPFARFHCN
301: NNNVGVGVST FPCLRSLHDN LNLPFFFSPM GHVSSADVAS FGAVTNWPAP EEQRMADGGS GMGIVPSELD CMWGY
101: AGYWKATGKD REIYSSKTCS LVGMKKTLVF YRGRAPKGEK SNWVMHEYRL EGKFAYHYLS RSSKDEWVIS RVFQKNTTGG GSTVSAAAAA TSGGSSKKTR
201: MTTSNTSSNM SLCPEPGSPS SIYLPPLLES SPYAAASTTT ATPAAAAFND HESCSFNSAV SNNNQREHVS CFSTISAAAF DHLVPPPEPP LDPFARFHCN
301: NNNVGVGVST FPCLRSLHDN LNLPFFFSPM GHVSSADVAS FGAVTNWPAP EEQRMADGGS GMGIVPSELD CMWGY
001: MDIPYYHYDH GGDSQYLPPG FRFHPTDEEL ITHYLLRKVL DGCFSSRAIA EVDLNKCEPW QLPGRAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA
101: TGKDREIFSS KTCALVGMKK TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLASTGAVSE GGGGGGATVS VSSGTGPSKK
201: TKVPSTISRN YQEQPSSPSS VSLPPLLDPT TTLGYTDSSC SYDSRSTNTT VTASAITEHV SCFSTVPTTT TALGLDVNSF SRLPPPLGFD FDPFPRFVSR
301: NVSTQSNFRS FQENFNQFPY FGSSSASTMT SAVNLPSFQG GGGVSGMNYW LPATAEENES KVGVLHAGLD CIWNY
101: TGKDREIFSS KTCALVGMKK TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLASTGAVSE GGGGGGATVS VSSGTGPSKK
201: TKVPSTISRN YQEQPSSPSS VSLPPLLDPT TTLGYTDSSC SYDSRSTNTT VTASAITEHV SCFSTVPTTT TALGLDVNSF SRLPPPLGFD FDPFPRFVSR
301: NVSTQSNFRS FQENFNQFPY FGSSSASTMT SAVNLPSFQG GGGVSGMNYW LPATAEENES KVGVLHAGLD CIWNY
Arabidopsis Description
NAC098Protein CUP-SHAPED COTYLEDON 2 [Source:UniProtKB/Swiss-Prot;Acc:O04017]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.