Factsheet for Os06t0344900-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os10t0362300-03

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53950.1	Os10t0362300-03	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035266_P001	Maize	nucleus	71.31	74.51
TraesCS7D01G342300.1	Wheat	nucleus	69.97	72.1
TraesCS7A01G334800.1	Wheat	nucleus	69.97	71.9
TraesCS7B01G246300.1	Wheat	nucleus	69.71	71.82
Zm00001d041791_P001	Maize	nucleus	66.76	67.66
HORVU7Hr1G082420.2	Barley	nucleus	69.17	65.82
KXG23228	Sorghum	plastid	76.14	63.96
GSMUA_Achr10P...	Banana	cytosol	47.72	50.14
KRH27280	Soybean	nucleus	45.04	48.98
GSMUA_Achr10P...	Banana	nucleus	43.43	48.8
Solyc07g062840.2.1	Tomato	nucleus	45.58	48.3
VIT_19s0014g02200.t01	Wine grape	nucleus	46.92	48.21
KRH22042	Soybean	nucleus	45.04	47.73
CDX75813	Canola	nucleus	37.53	45.45
CDX82444	Canola	nucleus	37.53	45.31
Bra001586.1-P	Field mustard	nucleus	37.53	45.31
CDY20103	Canola	nucleus	36.73	45.21
Bra021592.1-P	Field mustard	nucleus	36.73	45.21
KRH55187	Soybean	nucleus	45.31	45.07
AT3G15170.1	Thale cress	nucleus	37.27	44.84
KRH26232	Soybean	nucleus	43.97	44.81
CDY32316	Canola	nucleus	36.73	44.63
CDY28805	Canola	nucleus	43.16	43.87
Bra022685.1-P	Field mustard	nucleus	43.16	43.87
Bra003023.1-P	Field mustard	nucleus	41.82	43.7
CDX96262	Canola	nucleus	42.9	43.6
PGSC0003DMT400032280	Potato	nucleus	33.24	43.21
AT5G53950.1	Thale cress	nucleus	43.16	42.93
Os03t0624600-01	Rice	cytosol, mitochondrion, nucleus	36.46	42.11
CDX98529	Canola	mitochondrion	29.22	39.93
CDX99695	Canola	mitochondrion	29.22	39.93
Os01t0104500-01	Rice	cytosol, mitochondrion, nucleus	32.71	38.12
Os07t0684800-01	Rice	cytosol	30.29	37.54
Os09t0497900-01	Rice	cytosol	35.12	37.22
Os01t0393100-01	Rice	nucleus	32.71	37.2
Os04t0460600-02	Rice	cytosol, mitochondrion, nucleus	33.78	36.73
Os08t0200600-01	Rice	nucleus	28.69	36.52
Os08t0511200-00	Rice	cytosol	33.78	36.31
Os04t0515900-01	Rice	nucleus	26.81	35.97
Os02t0579000-01	Rice	mitochondrion	32.98	35.65
Os06t0675600-01	Rice	nucleus	28.69	35.2
Os12t0610600-01	Rice	nucleus	29.76	33.33
Os03t0327100-01	Rice	nucleus	31.64	32.96
Os12t0123800-01	Rice	nucleus	31.9	30.05
Os03t0109000-01	Rice	nucleus	23.86	29.97
Os02t0810900-01	Rice	nucleus	25.47	28.7
Os10t0477600-01	Rice	nucleus	24.13	27.78
Os11t0127000-01	Rice	nucleus	20.91	26.44

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	EntrezGene:4340969	ProteinID:BAD61787.1	ProteinID:BAF19492.1	ProteinID:BAS97644.1
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009790
GO:GO:0009791	GO:GO:0009987	GO:GO:0010072	GO:GO:0010223	GO:GO:0048366	GO:GO:0090691
GO:GO:0090709	InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	EnsemblPlantsGene:Os06g0344900
EnsemblPlants:Os06t0344900-00	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31744	PANTHER:PTHR31744:SF48	UniProt:Q5Z7R9
SUPFAM:SSF101941	UniParc:UPI0000450664	RefSeq:XP_015642575.1	SEG:seg	:	:

Description

NO APICAL MERISTEMSimilar to NAM / CUC2-like protein. (Os06t0344900-00)

Coordinates

chr6:+:13804017..13805898

Molecular Weight (calculated)

39176.3 Da

IEP (calculated)

8.805

GRAVY (calculated)

-0.247

Length

373 amino acids

Sequence
(BLAST)

001: MERCSVLGLG GGGGGGGRLD GELPPGFRFH PTDEELITYY LLRKVVDGSF NGRAIAEIDL NKCEPWELPE KAKMGEKEWY FYSLRDRKYP TGLRTNRATG
101: AGYWKATGKD REIRSARTGA LVGMKKTLVF YRGRAPKGQK TQWVMHEYRL DGTYAYHFLS SSTRDEWVIA RIFTKPGVFP VVRKGRLGIS GGGGDTSCFS
201: DSTSASVGGG GGTSASSALR APLAEASLFA AAAAPAVDGA DSSNYGGGGG AGSATATANL VTGLELVPCF STTAHMDASF GTGQYNPAPL AVEPPPPPPA
301: FFPSLRSLQE NLQLPLFLSG GMQAGVSSQP LSGGGAFHWQ SGMDVKVEGA VGRAPPQMAV GPGQLDGAFA WGF

Best Arabidopsis Sequence Match ( AT5G53950.1 )
(BLAST)

001: MDIPYYHYDH GGDSQYLPPG FRFHPTDEEL ITHYLLRKVL DGCFSSRAIA EVDLNKCEPW QLPGRAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA
101: TGKDREIFSS KTCALVGMKK TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLASTGAVSE GGGGGGATVS VSSGTGPSKK
201: TKVPSTISRN YQEQPSSPSS VSLPPLLDPT TTLGYTDSSC SYDSRSTNTT VTASAITEHV SCFSTVPTTT TALGLDVNSF SRLPPPLGFD FDPFPRFVSR
301: NVSTQSNFRS FQENFNQFPY FGSSSASTMT SAVNLPSFQG GGGVSGMNYW LPATAEENES KVGVLHAGLD CIWNY

Arabidopsis Description

NAC098Protein CUP-SHAPED COTYLEDON 2 [Source:UniProtKB/Swiss-Prot;Acc:O04017]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.