Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc07g047770.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53950.1 | Solyc07g047770.2.1 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400032280 | Potato | nucleus | 77.84 | 95.47 |
| KRH22042 | Soybean | nucleus | 63.07 | 63.07 |
| KRH27280 | Soybean | nucleus | 61.36 | 62.97 |
| VIT_19s0014g02200.t01 | Wine grape | nucleus | 64.49 | 62.53 |
| KRH26232 | Soybean | nucleus | 61.93 | 59.56 |
| KRH55187 | Soybean | nucleus | 61.65 | 57.87 |
| AT5G53950.1 | Thale cress | nucleus | 57.39 | 53.87 |
| Bra003023.1-P | Field mustard | nucleus | 54.26 | 53.5 |
| CDX96262 | Canola | nucleus | 54.26 | 52.04 |
| CDY28805 | Canola | nucleus | 53.98 | 51.77 |
| Bra022685.1-P | Field mustard | nucleus | 53.98 | 51.77 |
| GSMUA_Achr10P... | Banana | nucleus | 47.44 | 50.3 |
| AT3G15170.1 | Thale cress | nucleus | 43.18 | 49.03 |
| CDY20103 | Canola | nucleus | 42.05 | 48.84 |
| Bra021592.1-P | Field mustard | nucleus | 42.05 | 48.84 |
| CDX75813 | Canola | nucleus | 42.61 | 48.7 |
| Bra001586.1-P | Field mustard | nucleus | 42.61 | 48.54 |
| CDX82444 | Canola | nucleus | 42.61 | 48.54 |
| CDY32316 | Canola | nucleus | 41.48 | 47.56 |
| Zm00001d035266_P001 | Maize | nucleus | 46.88 | 46.22 |
| Os06t0344900-00 | Rice | cytosol, nucleus, plastid | 48.3 | 45.58 |
| Solyc03g115850.2.1 | Tomato | nucleus | 41.48 | 44.79 |
| Solyc08g006020.2.1 | Tomato | nucleus | 37.78 | 44.04 |
| Solyc12g036480.1.1 | Tomato | nucleus | 40.62 | 43.87 |
| Solyc06g069710.2.1 | Tomato | nucleus | 42.05 | 43.66 |
| Solyc02g088180.2.1 | Tomato | cytosol | 39.49 | 43.57 |
| CDX99695 | Canola | mitochondrion | 33.52 | 43.22 |
| CDX98529 | Canola | mitochondrion | 33.52 | 43.22 |
| Zm00001d041791_P001 | Maize | nucleus | 44.89 | 42.93 |
| TraesCS7B01G246300.1 | Wheat | nucleus | 43.18 | 41.99 |
| TraesCS7D01G342300.1 | Wheat | nucleus | 42.9 | 41.71 |
| TraesCS7A01G334800.1 | Wheat | nucleus | 42.9 | 41.6 |
| Solyc08g074300.2.1 | Tomato | nucleus | 37.5 | 38.71 |
| HORVU7Hr1G082420.2 | Barley | nucleus | 42.9 | 38.52 |
| KXG23228 | Sorghum | plastid | 46.88 | 37.16 |
| Solyc07g066330.2.1 | Tomato | nucleus | 33.52 | 34.5 |
| Solyc09g025310.2.1 | Tomato | nucleus | 26.42 | 34.44 |
| Solyc06g008360.2.1 | Tomato | nucleus | 27.27 | 34.04 |
| Solyc06g069100.1.1 | Tomato | nucleus | 37.22 | 26.36 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | ProteinID:ADN51994.1 | UniProt:B8XS01 | EMBL:FJ435163 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003441 | InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf |
| PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31744 | PANTHER:PTHR31744:SF22 | SUPFAM:SSF101941 | EnsemblPlantsGene:Solyc07g062840.2 |
| EnsemblPlants:Solyc07g062840.2.1 | UniParc:UPI00018E1D90 | SEG:seg | : | : | : |
Description
Goblet [Source:UniProtKB/TrEMBL;Acc:B8XS01]
Coordinates
chr7:+:65485289..65487433
Molecular Weight (calculated)
39512.4 Da
IEP (calculated)
8.347
GRAVY (calculated)
-0.514
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIYHQMQFD CGDPHLPPGF RFHPTDEELI TYYLLKKVLD CNFTARAIAE VDLNKCEPWE LPGKAKMGEK EWYFFSLRDR KYPTGLRTNR ATEAGYWKAT
101: GKDREIFSSK TCALVGMKKT LVFYRGRAPK GEKSNWVMHE YRLDGKFAYH YISRSSKDEW VISRVFQKST GSNGAATSTG GGKKRLSSSI NMYQEVSSPS
201: SVSHLPPLLD SSPYSTTATS AAAIVIGDRD RDHSFKKEHV PCFSTTATAT ITAQSLTFDP TSVFDISSNT LHALQPTPSF ASILDSSPSN FTNYTRNSTF
301: PSLRSLHENL QLPLFSGGTS AMHGGFSNPM VNWTVPETQK VEQSELDCMW SY
101: GKDREIFSSK TCALVGMKKT LVFYRGRAPK GEKSNWVMHE YRLDGKFAYH YISRSSKDEW VISRVFQKST GSNGAATSTG GGKKRLSSSI NMYQEVSSPS
201: SVSHLPPLLD SSPYSTTATS AAAIVIGDRD RDHSFKKEHV PCFSTTATAT ITAQSLTFDP TSVFDISSNT LHALQPTPSF ASILDSSPSN FTNYTRNSTF
301: PSLRSLHENL QLPLFSGGTS AMHGGFSNPM VNWTVPETQK VEQSELDCMW SY
001: MDIPYYHYDH GGDSQYLPPG FRFHPTDEEL ITHYLLRKVL DGCFSSRAIA EVDLNKCEPW QLPGRAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA
101: TGKDREIFSS KTCALVGMKK TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLASTGAVSE GGGGGGATVS VSSGTGPSKK
201: TKVPSTISRN YQEQPSSPSS VSLPPLLDPT TTLGYTDSSC SYDSRSTNTT VTASAITEHV SCFSTVPTTT TALGLDVNSF SRLPPPLGFD FDPFPRFVSR
301: NVSTQSNFRS FQENFNQFPY FGSSSASTMT SAVNLPSFQG GGGVSGMNYW LPATAEENES KVGVLHAGLD CIWNY
101: TGKDREIFSS KTCALVGMKK TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLASTGAVSE GGGGGGATVS VSSGTGPSKK
201: TKVPSTISRN YQEQPSSPSS VSLPPLLDPT TTLGYTDSSC SYDSRSTNTT VTASAITEHV SCFSTVPTTT TALGLDVNSF SRLPPPLGFD FDPFPRFVSR
301: NVSTQSNFRS FQENFNQFPY FGSSSASTMT SAVNLPSFQG GGGVSGMNYW LPATAEENES KVGVLHAGLD CIWNY
Arabidopsis Description
NAC098Protein CUP-SHAPED COTYLEDON 2 [Source:UniProtKB/Swiss-Prot;Acc:O04017]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.