Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53950.1 | CDX74635 | AT5G35750.1 | 18642946 |
| AT5G53950.1 | CDY47297 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28805 | Canola | nucleus | 97.55 | 97.55 |
| AT5G53950.1 | Thale cress | nucleus | 85.56 | 83.73 |
| CDY68680 | Canola | nucleus | 34.06 | 59.52 |
| CDY70041 | Canola | nucleus | 34.06 | 58.41 |
| CDY29982 | Canola | cytosol | 26.98 | 57.56 |
| KRH22042 | Soybean | nucleus | 54.5 | 56.82 |
| KRH27280 | Soybean | nucleus | 52.04 | 55.69 |
| VIT_19s0014g02200.t01 | Wine grape | nucleus | 53.68 | 54.27 |
| Solyc07g062840.2.1 | Tomato | nucleus | 52.04 | 54.26 |
| CDY51707 | Canola | cytosol | 22.62 | 52.53 |
| KRH26232 | Soybean | nucleus | 51.5 | 51.64 |
| KRH55187 | Soybean | nucleus | 52.59 | 51.47 |
| PGSC0003DMT400032280 | Potato | nucleus | 40.05 | 51.22 |
| CDX92881 | Canola | cytosol | 22.62 | 50.92 |
| CDX75813 | Canola | nucleus | 41.42 | 49.35 |
| CDX82444 | Canola | nucleus | 41.42 | 49.19 |
| CDY66026 | Canola | cytoskeleton, cytosol, nucleus | 34.33 | 48.65 |
| GSMUA_Achr10P... | Banana | nucleus | 43.6 | 48.19 |
| CDY69936 | Canola | nucleus | 37.06 | 48.06 |
| CDY64672 | Canola | nucleus | 36.78 | 47.7 |
| CDY32316 | Canola | nucleus | 39.78 | 47.56 |
| CDY20103 | Canola | nucleus | 39.24 | 47.52 |
| CDX75966 | Canola | nucleus | 35.42 | 46.26 |
| CDY37008 | Canola | nucleus | 35.97 | 45.83 |
| CDX67433 | Canola | nucleus | 35.69 | 45.49 |
| CDX74442 | Canola | nucleus | 35.69 | 45.33 |
| Zm00001d035266_P001 | Maize | nucleus | 43.87 | 45.1 |
| CDY30258 | Canola | nucleus | 35.42 | 44.98 |
| CDY14030 | Canola | nucleus | 38.42 | 44.76 |
| CDX99695 | Canola | mitochondrion | 32.97 | 44.32 |
| CDX98529 | Canola | mitochondrion | 32.97 | 44.32 |
| CDY18519 | Canola | nucleus | 36.24 | 44.04 |
| CDY51941 | Canola | nucleus | 35.69 | 43.81 |
| CDY67593 | Canola | nucleus | 36.51 | 43.65 |
| CDY69369 | Canola | nucleus | 35.97 | 43.42 |
| CDY40775 | Canola | nucleus | 37.87 | 42.9 |
| Os06t0344900-00 | Rice | cytosol, nucleus, plastid | 43.6 | 42.9 |
| CDX76817 | Canola | nucleus | 36.78 | 42.59 |
| CDY56940 | Canola | nucleus | 37.87 | 42.51 |
| CDY42875 | Canola | nucleus | 37.6 | 42.46 |
| CDY20314 | Canola | nucleus | 36.51 | 42.27 |
| CDY34773 | Canola | nucleus | 36.51 | 42.27 |
| CDX86391 | Canola | cytoskeleton, cytosol, nucleus | 34.88 | 41.42 |
| TraesCS7A01G334800.1 | Wheat | nucleus | 40.87 | 41.32 |
| TraesCS7B01G246300.1 | Wheat | nucleus | 40.6 | 41.16 |
| TraesCS7D01G342300.1 | Wheat | nucleus | 40.6 | 41.16 |
| CDX85242 | Canola | cytosol | 35.97 | 41.12 |
| Zm00001d041791_P001 | Maize | nucleus | 40.6 | 40.49 |
| CDY20411 | Canola | cytosol | 35.15 | 40.19 |
| CDY45986 | Canola | cytosol | 34.88 | 40.0 |
| CDY51910 | Canola | nucleus | 26.98 | 39.6 |
| HORVU7Hr1G082420.2 | Barley | nucleus | 40.6 | 38.01 |
| CDX87602 | Canola | cytosol | 34.33 | 37.61 |
| CDX88273 | Canola | cytosol | 34.33 | 37.39 |
| CDY50879 | Canola | cytoskeleton, cytosol, nucleus | 34.88 | 37.32 |
| CDY42901 | Canola | nucleus | 34.88 | 37.21 |
| CDX82566 | Canola | nucleus | 28.07 | 37.18 |
| CDY02636 | Canola | nucleus | 33.79 | 36.8 |
| CDY53250 | Canola | nucleus | 33.52 | 36.61 |
| CDX70804 | Canola | nucleus | 33.52 | 36.5 |
| CDY51238 | Canola | nucleus | 33.52 | 36.5 |
| KXG23228 | Sorghum | plastid | 43.32 | 35.81 |
| CDY60115 | Canola | nucleus | 26.98 | 35.48 |
| CDY20001 | Canola | cytoskeleton, cytosol, nucleus | 35.97 | 35.48 |
| CDY23558 | Canola | nucleus | 26.16 | 35.04 |
| CDY42401 | Canola | nucleus | 28.88 | 33.02 |
| CDY10515 | Canola | nucleus | 28.88 | 32.92 |
| CDY35197 | Canola | nucleus | 25.89 | 28.44 |
| CDX97445 | Canola | cytosol | 25.89 | 28.27 |
| CDY14236 | Canola | cytosol | 25.89 | 28.27 |
| CDY38380 | Canola | nucleus | 25.89 | 27.62 |
| CDX92880 | Canola | nucleus | 5.18 | 9.6 |
| CDY51708 | Canola | nucleus | 4.9 | 9.05 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078E573 | EnsemblPlants:CDX96262 | ProteinID:CDX96262 | ProteinID:CDX96262.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00102391001 | InterPro:IPR003441 |
| InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31744 |
| PANTHER:PTHR31744:SF22 | SUPFAM:SSF101941 | UniParc:UPI0004EED2BA | SEG:seg | : | : |
Description
BnaC02g13890D
Coordinates
chrLK031893:-:1288996..1290774
Molecular Weight (calculated)
40905.8 Da
IEP (calculated)
8.931
GRAVY (calculated)
-0.537
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIPYHHYDH GGDSQYLPPG FRFHPTDEEL ITHYLLRKVI EGCFSSRAIA EVDLNKSEPW QLPGKAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA
101: TGKDREIYSS KTCALVGMKK TLVFYKGRAP KGEKSSWVMH EYRLEGKFSY HFISRSSKDE WVISRVFKKT GLATTGASAG ASISVSNGTG TSKKTKIPSN
201: ISTNYREQPS SPSSVSLPPL LDPTTTLGYT DSSWSYDSRS TNTPVITTAI TEHVSCFSTA TTTTALGLDV NVDSFNHLLP PVPPGFDPFL RFVSRNVSPL
301: SNFRSFQENF NHFPYYGSSS ASTMTTSVNL PSSHGGTGMN YWLQTTAEEN ETKAGLLNGG LDCVWNY
101: TGKDREIYSS KTCALVGMKK TLVFYKGRAP KGEKSSWVMH EYRLEGKFSY HFISRSSKDE WVISRVFKKT GLATTGASAG ASISVSNGTG TSKKTKIPSN
201: ISTNYREQPS SPSSVSLPPL LDPTTTLGYT DSSWSYDSRS TNTPVITTAI TEHVSCFSTA TTTTALGLDV NVDSFNHLLP PVPPGFDPFL RFVSRNVSPL
301: SNFRSFQENF NHFPYYGSSS ASTMTTSVNL PSSHGGTGMN YWLQTTAEEN ETKAGLLNGG LDCVWNY
001: MDIPYYHYDH GGDSQYLPPG FRFHPTDEEL ITHYLLRKVL DGCFSSRAIA EVDLNKCEPW QLPGRAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA
101: TGKDREIFSS KTCALVGMKK TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLASTGAVSE GGGGGGATVS VSSGTGPSKK
201: TKVPSTISRN YQEQPSSPSS VSLPPLLDPT TTLGYTDSSC SYDSRSTNTT VTASAITEHV SCFSTVPTTT TALGLDVNSF SRLPPPLGFD FDPFPRFVSR
301: NVSTQSNFRS FQENFNQFPY FGSSSASTMT SAVNLPSFQG GGGVSGMNYW LPATAEENES KVGVLHAGLD CIWNY
101: TGKDREIFSS KTCALVGMKK TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLASTGAVSE GGGGGGATVS VSSGTGPSKK
201: TKVPSTISRN YQEQPSSPSS VSLPPLLDPT TTLGYTDSSC SYDSRSTNTT VTASAITEHV SCFSTVPTTT TALGLDVNSF SRLPPPLGFD FDPFPRFVSR
301: NVSTQSNFRS FQENFNQFPY FGSSSASTMT SAVNLPSFQG GGGVSGMNYW LPATAEENES KVGVLHAGLD CIWNY
Arabidopsis Description
NAC098Protein CUP-SHAPED COTYLEDON 2 [Source:UniProtKB/Swiss-Prot;Acc:O04017]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.