Factsheet for Zm00001d041791_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014297_P006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53950.1	Zm00001d014297_P006	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035266_P001	Maize	nucleus	70.38	72.55
Os06t0344900-00	Rice	cytosol, nucleus, plastid	67.66	66.76
KXG23228	Sorghum	plastid	78.53	65.09
TraesCS7B01G246300.1	Wheat	nucleus	62.5	63.54
TraesCS7D01G342300.1	Wheat	nucleus	62.5	63.54
TraesCS7A01G334800.1	Wheat	nucleus	61.68	62.53
HORVU7Hr1G082420.2	Barley	nucleus	61.96	58.16
GSMUA_Achr10P...	Banana	nucleus	42.12	46.69
GSMUA_Achr10P...	Banana	cytosol	44.02	45.63
Solyc07g062840.2.1	Tomato	nucleus	42.93	44.89
KRH27280	Soybean	nucleus	41.58	44.61
VIT_19s0014g02200.t01	Wine grape	nucleus	43.48	44.08
Bra021592.1-P	Field mustard	nucleus	35.87	43.56
CDY20103	Canola	nucleus	35.87	43.56
KRH22042	Soybean	nucleus	41.58	43.47
CDY32316	Canola	nucleus	36.14	43.32
KRH26232	Soybean	nucleus	42.93	43.17
CDX75813	Canola	nucleus	35.87	42.86
CDX82444	Canola	nucleus	35.87	42.72
Bra001586.1-P	Field mustard	nucleus	35.87	42.72
KRH55187	Soybean	nucleus	43.48	42.67
AT3G15170.1	Thale cress	nucleus	35.87	42.58
CDY28805	Canola	nucleus	40.76	40.87
Bra022685.1-P	Field mustard	nucleus	40.76	40.87
Bra003023.1-P	Field mustard	nucleus	39.4	40.62
CDX96262	Canola	nucleus	40.49	40.6
AT5G53950.1	Thale cress	nucleus	41.03	40.27
PGSC0003DMT400032280	Potato	nucleus	30.98	39.72
Zm00001d033308_P001	Maize	nucleus	35.05	39.57
CDX99695	Canola	mitochondrion	28.53	38.46
CDX98529	Canola	mitochondrion	28.53	38.46
Zm00001d013717_P001	Maize	nucleus	33.42	37.27
Zm00001d024268_P001	Maize	cytosol, nucleus, plastid	28.26	36.88
Zm00001d022517_P001	Maize	nucleus	31.52	36.48
Zm00001d050893_P001	Maize	nucleus	34.24	36.21
Zm00001d005028_P001	Maize	cytosol	31.25	35.71
Zm00001d003414_P002	Maize	cytosol, mitochondrion, nucleus	35.05	35.34
Zm00001d003052_P001	Maize	cytosol, mitochondrion, nucleus	28.26	35.02
Zm00001d051140_P001	Maize	cytosol, mitochondrion, nucleus	27.72	34.69
Zm00001d014405_P001	Maize	nucleus	28.53	34.43
Zm00001d047554_P001	Maize	cytoskeleton, cytosol, nucleus	32.34	34.2
Zm00001d028995_P001	Maize	cytosol	32.61	34.19
Zm00001d025861_P001	Maize	cytosol, nucleus, plastid	26.9	33.79
Zm00001d016950_P002	Maize	nucleus	33.97	33.24
Zm00001d020982_P001	Maize	cytosol, mitochondrion, nucleus	33.97	33.24
Zm00001d006053_P001	Maize	nucleus	34.51	32.73
Zm00001d018435_P001	Maize	cytosol, mitochondrion, nucleus	25.82	32.09
Zm00001d052390_P001	Maize	nucleus	32.34	32.08
Zm00001d041472_P001	Maize	cytosol, nucleus, peroxisome	28.8	31.27
Zm00001d002285_P001	Maize	cytosol, nucleus, plastid	26.9	31.23
Zm00001d051956_P001	Maize	cytosol, mitochondrion, nucleus	25.27	31.21
Zm00001d040189_P002	Maize	mitochondrion, nucleus, peroxisome	30.98	29.16
Zm00001d031463_P002	Maize	mitochondrion	32.61	28.44
Zm00001d008403_P001	Maize	plastid	23.91	27.33

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	EntrezGene:606437	UniProt:A0A1D6MY88	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	ProteinID:ONM33690.1
PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31744	PANTHER:PTHR31744:SF48	SUPFAM:SSF101941	UniParc:UPI0002207DC5
EnsemblPlantsGene:Zm00001d041791	EnsemblPlants:Zm00001d041791_P001	EnsemblPlants:Zm00001d041791_T001	SEG:seg	:	:

Description

NAC-transcription factor 84Protein CUP-SHAPED COTYLEDON 3

Coordinates

chr3:+:138257127..138259382

Molecular Weight (calculated)

38729.1 Da

IEP (calculated)

8.547

GRAVY (calculated)

-0.185

Length

368 amino acids

Sequence
(BLAST)

001: MERLGVGVGV GELPPGFRFH PTDEELITYY LLCKAVDGGF CGGRAIAEID LNKCEPWELP DKAKMGEKEW YFYCLRDRKY PTGLRTNRAT AAGYWKATGK
101: DREVRSGRSG ALVGMKKTLV FYRGRAPRGQ KTRWVMHEYR LDGTYAYHFL PGSTRDEWVI ARVFQKPGEV PCGRKHRLGG PSAAAGESCF SDSTTSASIG
201: GGGGGGASAS SRPLLTVTDT SSPSLFVANA NAAASNNNGN PVTGRELVPC FSTTASPLEA AALGVVGHPY NAAPLRLGLD FEAPSPGFVV PNLRSLQVQD
301: DGGLPLFLSA AAGGGMSSAT LGIMGSLGGS LHCPPHAGMD VVKVEGRAAP PQMAVGPGLL DGAFAWGF

Best Arabidopsis Sequence Match ( AT5G53950.1 )
(BLAST)

001: MDIPYYHYDH GGDSQYLPPG FRFHPTDEEL ITHYLLRKVL DGCFSSRAIA EVDLNKCEPW QLPGRAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA
101: TGKDREIFSS KTCALVGMKK TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLASTGAVSE GGGGGGATVS VSSGTGPSKK
201: TKVPSTISRN YQEQPSSPSS VSLPPLLDPT TTLGYTDSSC SYDSRSTNTT VTASAITEHV SCFSTVPTTT TALGLDVNSF SRLPPPLGFD FDPFPRFVSR
301: NVSTQSNFRS FQENFNQFPY FGSSSASTMT SAVNLPSFQG GGGVSGMNYW LPATAEENES KVGVLHAGLD CIWNY

Arabidopsis Description

NAC098Protein CUP-SHAPED COTYLEDON 2 [Source:UniProtKB/Swiss-Prot;Acc:O04017]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.