Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_12s0057g00690.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53950.1 | VIT_12s0057g00690.t01 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g062840.2.1 | Tomato | nucleus | 62.53 | 64.49 |
| KRH26232 | Soybean | nucleus | 64.19 | 63.66 |
| KRH55187 | Soybean | nucleus | 64.46 | 62.4 |
| PGSC0003DMT400032280 | Potato | nucleus | 48.48 | 61.32 |
| Bra003023.1-P | Field mustard | nucleus | 53.72 | 54.62 |
| AT5G53950.1 | Thale cress | nucleus | 55.92 | 54.13 |
| CDX96262 | Canola | nucleus | 54.27 | 53.68 |
| Bra022685.1-P | Field mustard | nucleus | 53.72 | 53.13 |
| CDY28805 | Canola | nucleus | 53.72 | 53.13 |
| GSMUA_Achr10P... | Banana | nucleus | 48.48 | 53.01 |
| CDX75813 | Canola | nucleus | 43.53 | 51.3 |
| CDX82444 | Canola | nucleus | 43.53 | 51.13 |
| Bra001586.1-P | Field mustard | nucleus | 43.53 | 51.13 |
| AT3G15170.1 | Thale cress | nucleus | 42.98 | 50.32 |
| CDY20103 | Canola | nucleus | 41.87 | 50.16 |
| Bra021592.1-P | Field mustard | nucleus | 41.87 | 50.16 |
| CDY32316 | Canola | nucleus | 41.87 | 49.51 |
| Zm00001d035266_P001 | Maize | nucleus | 48.48 | 49.3 |
| Os06t0344900-00 | Rice | cytosol, nucleus, plastid | 48.21 | 46.92 |
| TraesCS7D01G342300.1 | Wheat | nucleus | 44.63 | 44.75 |
| TraesCS7B01G246300.1 | Wheat | nucleus | 44.63 | 44.75 |
| VIT_17s0000g03660.t01 | Wine grape | nucleus | 40.22 | 44.65 |
| VIT_04s0008g02710.t01 | Wine grape | nucleus | 39.67 | 44.31 |
| TraesCS7A01G334800.1 | Wheat | nucleus | 44.08 | 44.08 |
| CDX98529 | Canola | mitochondrion | 33.06 | 43.96 |
| CDX99695 | Canola | mitochondrion | 33.06 | 43.96 |
| VIT_17s0000g06400.t01 | Wine grape | nucleus | 43.53 | 43.89 |
| Zm00001d041791_P001 | Maize | nucleus | 44.08 | 43.48 |
| HORVU7Hr1G082420.2 | Barley | nucleus | 44.08 | 40.82 |
| VIT_19s0027g00230.t01 | Wine grape | nucleus | 32.51 | 40.0 |
| KXG23228 | Sorghum | plastid | 47.93 | 39.19 |
| VIT_08s0007g07640.t01 | Wine grape | nucleus | 41.87 | 37.72 |
| VIT_14s0108g01070.t01 | Wine grape | nucleus | 41.87 | 36.1 |
| VIT_18s0122g00800.t01 | Wine grape | nucleus | 38.02 | 32.47 |
| VIT_07s0005g03610.t01 | Wine grape | mitochondrion, nucleus | 21.21 | 31.43 |
Protein Annotations
| EntrezGene:100246914 | wikigene:100246914 | MapMan:15.5.17 | Gene3D:3.30.310.150 | ProteinID:CCB46315 | ProteinID:CCB46315.1 |
| UniProt:F6H219 | EMBL:FN595229 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003441 |
| InterPro:IPR036093 | EntrezGene:LOC100246914 | wikigene:LOC100246914 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 |
| PFscan:PS51005 | PANTHER:PTHR31744 | PANTHER:PTHR31744:SF22 | SUPFAM:SSF101941 | UniParc:UPI00015C7F1F | ArrayExpress:VIT_19s0014g02200 |
| EnsemblPlantsGene:VIT_19s0014g02200 | EnsemblPlants:VIT_19s0014g02200.t01 | RefSeq:XP_002282655 | RefSeq:XP_002282655.1 | RefSeq:XP_010644174.1 | SEG:seg |
Description
No Description!
Coordinates
chr19:+:2325829..2327321
Molecular Weight (calculated)
40005.6 Da
IEP (calculated)
7.652
GRAVY (calculated)
-0.582
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAYHHFDNS DAHLPPGFRF HPTDEELITY YLIKKVLDSN FTGRAIAEVD LNKCEPWELP EKAKMGEKEW YFFSLRDRKY PTGLRTNRAT EAGYWKATGK
101: DREIYSSKTC SLVGMKKTLV FYRGRAPKGE KSNWVMHEYR LEGKFAYHYL SRSSKDEWVI SRVFQKSGSS GGGGATGGKK ARLSSTVNLY PEVSSPSSAS
201: LPPLLDVSPY AGTSAAAAVN DRESCSYDGG ESSNNSNARD QHVPWFSTIA AAAAAAAANS FNAHHQPPPF DLAPPSIIGS IDPSRFPRNG AVPAFPNLRS
301: LQENLHLPFF FSQVAPPIPS SGDPSTEMGI TNSAGNWPAP ENQKMDNGRL PMGATELDCM WSY
101: DREIYSSKTC SLVGMKKTLV FYRGRAPKGE KSNWVMHEYR LEGKFAYHYL SRSSKDEWVI SRVFQKSGSS GGGGATGGKK ARLSSTVNLY PEVSSPSSAS
201: LPPLLDVSPY AGTSAAAAVN DRESCSYDGG ESSNNSNARD QHVPWFSTIA AAAAAAAANS FNAHHQPPPF DLAPPSIIGS IDPSRFPRNG AVPAFPNLRS
301: LQENLHLPFF FSQVAPPIPS SGDPSTEMGI TNSAGNWPAP ENQKMDNGRL PMGATELDCM WSY
001: MDIPYYHYDH GGDSQYLPPG FRFHPTDEEL ITHYLLRKVL DGCFSSRAIA EVDLNKCEPW QLPGRAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA
101: TGKDREIFSS KTCALVGMKK TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLASTGAVSE GGGGGGATVS VSSGTGPSKK
201: TKVPSTISRN YQEQPSSPSS VSLPPLLDPT TTLGYTDSSC SYDSRSTNTT VTASAITEHV SCFSTVPTTT TALGLDVNSF SRLPPPLGFD FDPFPRFVSR
301: NVSTQSNFRS FQENFNQFPY FGSSSASTMT SAVNLPSFQG GGGVSGMNYW LPATAEENES KVGVLHAGLD CIWNY
101: TGKDREIFSS KTCALVGMKK TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLASTGAVSE GGGGGGATVS VSSGTGPSKK
201: TKVPSTISRN YQEQPSSPSS VSLPPLLDPT TTLGYTDSSC SYDSRSTNTT VTASAITEHV SCFSTVPTTT TALGLDVNSF SRLPPPLGFD FDPFPRFVSR
301: NVSTQSNFRS FQENFNQFPY FGSSSASTMT SAVNLPSFQG GGGVSGMNYW LPATAEENES KVGVLHAGLD CIWNY
Arabidopsis Description
NAC098Protein CUP-SHAPED COTYLEDON 2 [Source:UniProtKB/Swiss-Prot;Acc:O04017]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.