Factsheet for VIT_14s0108g01070.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g06400.t01	Wine grape	nucleus	57.01	66.67
Solyc03g115850.2.1	Tomato	nucleus	49.17	63.5
PGSC0003DMT400083083	Potato	cytosol	50.59	63.39
PGSC0003DMT400050262	Potato	nucleus	49.88	63.25
Solyc06g069710.2.1	Tomato	nucleus	50.59	62.83
GSMUA_Achr6P30570_001	Banana	cytosol, nucleus, plastid	39.91	51.69
GSMUA_Achr9P27530_001	Banana	nucleus	40.38	51.2
KRH40061	Soybean	nucleus	42.76	49.59
KRH18465	Soybean	nucleus	40.86	48.04
KRG93561	Soybean	nucleus	41.09	47.79
KRH01200	Soybean	mitochondrion, nucleus	42.99	46.65
VIT_08s0007g07640.t01	Wine grape	nucleus	40.62	42.43
VIT_19s0014g02200.t01	Wine grape	nucleus	36.1	41.87
VIT_17s0000g03660.t01	Wine grape	nucleus	32.07	41.28
VIT_19s0027g00230.t01	Wine grape	nucleus	28.27	40.34
VIT_04s0008g02710.t01	Wine grape	nucleus	30.17	39.08
VIT_18s0122g00800.t01	Wine grape	nucleus	32.07	31.76
VIT_07s0005g03610.t01	Wine grape	mitochondrion, nucleus	17.58	30.2

Protein Annotations

EntrezGene:100250998	wikigene:100250998	MapMan:15.5.17	Gene3D:3.30.310.150	ProteinID:CCB47571	ProteinID:CCB47571.1
UniProt:F6H5V0	EMBL:FN595239	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441
InterPro:IPR036093	EntrezGene:LOC100250998	wikigene:LOC100250998	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365
PFscan:PS51005	PANTHER:PTHR31744	PANTHER:PTHR31744:SF7	SUPFAM:SSF101941	TIGR:TC53124	UniParc:UPI000210814C
ArrayExpress:VIT_14s0108g01070	EnsemblPlantsGene:VIT_14s0108g01070	EnsemblPlants:VIT_14s0108g01070.t01	unigene:Vvi.7994	RefSeq:XP_002283811	RefSeq:XP_002283811.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:+:29705236..29707523

Molecular Weight (calculated)

47863.1 Da

IEP (calculated)

5.512

GRAVY (calculated)

-0.720

Length

421 amino acids

Sequence
(BLAST)

001: MKGKSNPYYR GVEENFGVRV GTEESPSVIF ERWDAGFCIL FPHSDRYDNK GFREDFEGME KAPDQSKDDE MMELPPGFRF HPTDEELITH YLSQKVLNSG
101: FCAVAIGEVD LNKCEPWDLP WKAKMGEKEW YFFCVRDRKY PTGLRTNRAT DAGYWKATGK DKEIYKMKTL VGMKKTLVFY KGRAPKGEKT NWVMHEYRLE
201: GKHSMYNLPK TTKNEWVICR VFQKSSGGKK THISGLVRMD PYGDELRSSS QLPPLTDSSP FSSETRTVGD SSHVTCFSNQ MEDRKPQEDM IDSFNNPLLA
301: ASSSSSNPSD ISPASLLFSK FPFPNSFHTP QNPLNLGNCQ FPDSFLIPDQ SILRILLENQ GSDMKPSSKT EFSQETGLST DINTDISSVV STHEMVQRSF
401: EDQNDPSTSA GPVDIDCLWN Y

Best Arabidopsis Sequence Match ( AT5G61430.1 )
(BLAST)

001: METFCGFQKE EEQMDLPPGF RFHPTDEELI THYLHKKVLD TSFSAKAIGE VDLNKSEPWE LPWMAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT
101: GKDKEIYRGK SLVGMKKTLV FYRGRAPKGQ KTNWVMHEYR LEGKFSAHNL PKTAKNEWVI CRVFQKSAGG KKIPISSLIR IGSLGTDFNP SLLPSLTDSS
201: PYNDKTKTEP VYVPCFSNQT DQNQGTTLNC FSSPVLNSIQ ADIFHRIPLY QTQSLQVSMN LQSPVLTQEH SVLHAMIENN RRQSLKTMSV SQETGVSTDM
301: NTDISSDFEF GKRRFDSQED PSSSTGPVDL EPFWNY

Arabidopsis Description

NAC100NAC domain-containing protein 100 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.