Factsheet for VIT_18s0122g00800.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P20090_001	Banana	cytosol	43.53	58.36
PGSC0003DMT400025690	Potato	nucleus	47.06	56.34
Os08t0511200-00	Rice	cytosol	38.82	47.55
Bra008259.1-P	Field mustard	cytosol	35.76	47.5
CDY45986	Canola	cytosol	35.76	47.5
CDY20411	Canola	cytosol	35.53	47.04
TraesCS7B01G143900.1	Wheat	nucleus	36.94	47.01
TraesCS7D01G246100.1	Wheat	cytosol	36.94	46.87
KRH60880	Soybean	nucleus	38.35	46.57
EES14261	Sorghum	nucleus	37.18	46.33
TraesCS7A01G247600.1	Wheat	extracellular	36.71	46.29
CDX87602	Canola	cytosol	36.24	45.97
Bra015750.1-P	Field mustard	cytosol	36.24	45.97
CDX88273	Canola	cytosol	36.24	45.7
AT1G76420.1	Thale cress	cytosol	35.29	44.91
KRH51562	Soybean	nucleus	38.59	43.85
VIT_04s0008g02710.t01	Wine grape	nucleus	31.76	41.54
VIT_17s0000g03660.t01	Wine grape	nucleus	29.65	38.53
VIT_19s0014g02200.t01	Wine grape	nucleus	32.47	38.02
Zm00001d031463_P002	Maize	mitochondrion	37.18	37.44
VIT_17s0000g06400.t01	Wine grape	nucleus	29.88	35.28
VIT_19s0027g00230.t01	Wine grape	nucleus	23.29	33.56
VIT_14s0108g01070.t01	Wine grape	nucleus	31.76	32.07
VIT_08s0007g07640.t01	Wine grape	nucleus	30.35	32.01
VIT_07s0005g03610.t01	Wine grape	mitochondrion, nucleus	17.41	30.2

Protein Annotations

EntrezGene:100256459	wikigene:100256459	MapMan:15.5.17	Gene3D:3.30.310.150	ProteinID:CCB62672	ProteinID:CCB62672.1
UniProt:F6I6V4	EMBL:FN596759	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441
InterPro:IPR036093	EntrezGene:LOC100256459	wikigene:LOC100256459	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365
PFscan:PS51005	PANTHER:PTHR31744	PANTHER:PTHR31744:SF49	SUPFAM:SSF101941	UniParc:UPI00019851B6	ArrayExpress:VIT_18s0122g00800
EnsemblPlantsGene:VIT_18s0122g00800	EnsemblPlants:VIT_18s0122g00800.t01	RefSeq:XP_002273222	RefSeq:XP_002273222.2	RefSeq:XP_010663998.1	SEG:seg

Description

No Description!

Coordinates

chr18:+:589627..592083

Molecular Weight (calculated)

46688.0 Da

IEP (calculated)

6.452

GRAVY (calculated)

-0.366

Length

425 amino acids

Sequence
(BLAST)

001: MLAMEEVLCE LSREDINEQG LPPGFRFHPT DEELITFYLA SKVFNGSFCG VEIAEVDLNR CEPWELPDVA KMGEREWYFF SLRDRKYPTG LRTNRATGAG
101: YWKATGKDRE VHSASSGALL GMKKTLVFYK GRAPRGEKTK WVMHEYRLDG DFSYRHTCKE EWVICRIFHK TGEKKNPMFQ GQAYLLGSSA AAAVATSSLP
201: ALLESQTTLL ESQSHPTMQG GISSSFLVHH HHDQESNELK ALINPVLSQS PLAFPINSGF QSCSFSTTPT TNIPNTNNIN STTGNNNPST SILFKSLLSH
301: QECSLKEQTT IPKQCKTEAN FSHFQLPDAN MHWVDRMNSN LHQNPLFFEM DYCSGGVLGF TAATATGGGG GGGGASAAAT SAAVASAAET VHEMSTSIAF
401: NRAGFQMMVD FPIRVPGGES WPLDP

Best Arabidopsis Sequence Match ( AT1G76420.1 )
(BLAST)

001: MMLAVEDVLS ELAGEERNER GLPPGFRFHP TDEELITFYL ASKIFHGGLS GIHISEVDLN RCEPWELPEM AKMGEREWYF YSLRDRKYPT GLRTNRATTA
101: GYWKATGKDK EVFSGGGGQL VGMKKTLVFY KGRAPRGLKT KWVMHEYRLE NDHSHRHTCK EEWVICRVFN KTGDRKNVGL IHNQISYLHN HSLSTTHHHH
201: HEALPLLIEP SNKTLTNFPS LLYDDPHQNY NNNNFLHGSS GHNIDELKAL INPVVSQLNG IIFPSGNNNN DEDDFDFNLG VKTEQSSNGN EIDVRDYLEN
301: PLFQEASYGL LGFSSSPGPL HMLLDSPCPL GFQL

Arabidopsis Description

NAC031Protein CUP-SHAPED COTYLEDON 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9S851]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.