Factsheet for VIT_17s0000g03660.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68680	Canola	nucleus	49.24	76.67
CDY70041	Canola	nucleus	50.15	76.64
KRH48487	Soybean	nucleus	67.28	67.9
Solyc12g036480.1.1	Tomato	nucleus	66.06	66.26
Bra022319.1-P	Field mustard	nucleus	62.08	66.12
CDY18519	Canola	nucleus	60.86	65.89
Bra037585.1-P	Field mustard	nucleus	60.24	65.67
KRH39185	Soybean	nucleus	66.36	65.56
KRH60340	Soybean	nucleus	64.22	65.42
CDY69369	Canola	nucleus	60.55	65.13
CDY67593	Canola	nucleus	60.86	64.82
PGSC0003DMT400013753	Potato	nucleus	65.14	63.58
Bra001705.1-P	Field mustard	nucleus	58.1	63.55
AT3G18400.1	Thale cress	nucleus	60.86	63.38
KRH41635	Soybean	nucleus	60.55	63.26
CDY51941	Canola	nucleus	57.8	63.21
CDX75966	Canola	nucleus	54.13	62.99
GSMUA_Achr8P18420_001	Banana	nucleus	50.46	57.29
TraesCS4B01G072400.1	Wheat	cytosol, mitochondrion, nucleus	50.46	55.18
TraesCS4D01G071200.1	Wheat	cytosol, mitochondrion, nucleus	49.85	54.52
HORVU4Hr1G012030.1	Barley	cytosol, mitochondrion, nucleus	49.54	54.18
TraesCS4A01G242700.1	Wheat	cytosol, mitochondrion, nucleus	49.54	54.18
GSMUA_Achr9P00570_001	Banana	nucleus	27.22	52.98
Zm00001d033308_P001	Maize	nucleus	51.07	51.23
GSMUA_Achr10P...	Banana	nucleus	51.38	51.22
EER93792	Sorghum	cytosol, mitochondrion, nucleus	51.68	49.56
Zm00001d013717_P001	Maize	nucleus	49.54	49.09
PGSC0003DMT400074048	Potato	nucleus	43.73	46.89
Os03t0624600-01	Rice	cytosol, mitochondrion, nucleus	46.18	46.75
VIT_04s0008g02710.t01	Wine grape	nucleus	43.43	43.69
VIT_19s0014g02200.t01	Wine grape	nucleus	44.65	40.22
VIT_17s0000g06400.t01	Wine grape	nucleus	40.06	36.39
VIT_19s0027g00230.t01	Wine grape	nucleus	31.5	34.92
VIT_08s0007g07640.t01	Wine grape	nucleus	41.59	33.75
VIT_14s0108g01070.t01	Wine grape	nucleus	41.28	32.07
VIT_07s0005g03610.t01	Wine grape	mitochondrion, nucleus	22.63	30.2
VIT_18s0122g00800.t01	Wine grape	nucleus	38.53	29.65
Solyc06g069100.1.1	Tomato	nucleus	44.34	29.18

Protein Annotations

EntrezGene:100266459	wikigene:100266459	MapMan:15.5.17	Gene3D:3.30.310.150	EMBL:AM487670	ProteinID:CAN77752
ProteinID:CAN77752.1	ProteinID:CBI15455	ProteinID:CBI15455.3	UniProt:D7SIZ4	EMBL:FN594950	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	EntrezGene:LOC100266459	wikigene:LOC100266459
InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31744	PANTHER:PTHR31744:SF3
SUPFAM:SSF101941	UniParc:UPI00015CA03D	ArrayExpress:VIT_17s0000g03660	EnsemblPlantsGene:VIT_17s0000g03660	EnsemblPlants:VIT_17s0000g03660.t01	RefSeq:XP_002276293
RefSeq:XP_002276293.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr17:-:3581774..3583654

Molecular Weight (calculated)

37085.6 Da

IEP (calculated)

8.409

GRAVY (calculated)

-0.653

Length

327 amino acids

Sequence
(BLAST)

001: MEESLPPGFR FHPTDEELIT YYLTPKVSNT NFASRAIADV DLNKCEPWDL PAKASMGEKE WYFFSLRDRK YPTGIRTNRA TEAGYWKTTG KDKEIYRAGI
101: LVGMKKTLVF YKGRAPKGEK SNWVMHEYRL ETKLSFKPKK EEWVVCRVFK KSSAVKKPHQ PAPSSLPSLE SPCDTNTIVS EFGDIEFPNM NSIANSSSGF
201: SNINSAQSYN TSTDDNLNMN MNMNMNMNWA AAREAASLPS LPWSSSLLSP NLQMNSLLIK ALQLGSYRPR EATSTENYSF LPQGISNFGT DFISNFQASS
301: SKVLDSLHQQ QQQQQQEQPF NLDSINW

Best Arabidopsis Sequence Match ( AT3G18400.1 )
(BLAST)

001: MEENLPPGFR FHPTDEELIT HYLCRKVSDI GFTGKAVVDV DLNKCEPWDL PAKASMGEKE WYFFSQRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYRSGV
101: LVGMKKTLVF YKGRAPKGEK SNWVMHEYRL ESKQPFNPTN KEEWVVCRVF EKSTAAKKAQ EQQPQSSQPS FGSPCDANSS MANEFEDIDE LPNLNSNSST
201: IDYNNHIHQY SQRNVYSEDN TTSTAGLNMN MNMASTNLQS WTTSLLGPPL SPINSLLLKA FQIRNSYSFP KEMIPSFNHS SLQQGVSNMI QNASSSSQVQ
301: PQPQEEAFNM DSIW

Arabidopsis Description

anac058NAC domain containing protein 58 [Source:UniProtKB/TrEMBL;Acc:Q9LS50]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.