Factsheet for Solyc12g036480.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013753	Potato	nucleus	92.94	90.45
CDY68680	Canola	nucleus	45.71	70.95
CDY70041	Canola	nucleus	45.71	69.63
VIT_17s0000g03660.t01	Wine grape	nucleus	66.26	66.06
KRH48487	Soybean	nucleus	60.12	60.49
KRH60340	Soybean	nucleus	58.9	59.81
Bra037585.1-P	Field mustard	nucleus	54.6	59.33
CDY18519	Canola	nucleus	54.91	59.27
KRH39185	Soybean	nucleus	60.12	59.21
Bra001705.1-P	Field mustard	nucleus	54.29	59.2
CDY51941	Canola	nucleus	54.29	59.2
CDX75966	Canola	nucleus	50.61	58.72
KRH41635	Soybean	nucleus	56.13	58.47
Bra022319.1-P	Field mustard	nucleus	54.91	58.31
CDY69369	Canola	nucleus	53.99	57.89
CDY67593	Canola	nucleus	54.29	57.65
AT3G18400.1	Thale cress	nucleus	54.91	57.01
GSMUA_Achr8P18420_001	Banana	nucleus	49.08	55.56
GSMUA_Achr9P00570_001	Banana	nucleus	27.91	54.17
TraesCS4D01G071200.1	Wheat	cytosol, mitochondrion, nucleus	48.77	53.18
HORVU4Hr1G012030.1	Barley	cytosol, mitochondrion, nucleus	48.16	52.51
TraesCS4B01G072400.1	Wheat	cytosol, mitochondrion, nucleus	48.16	52.51
TraesCS4A01G242700.1	Wheat	cytosol, mitochondrion, nucleus	47.85	52.17
Zm00001d033308_P001	Maize	nucleus	49.08	49.08
GSMUA_Achr10P...	Banana	nucleus	48.47	48.17
EER93792	Sorghum	cytosol, mitochondrion, nucleus	48.16	46.04
Zm00001d013717_P001	Maize	nucleus	45.09	44.55
Os03t0624600-01	Rice	cytosol, mitochondrion, nucleus	43.56	43.96
Solyc08g006020.2.1	Tomato	nucleus	40.49	43.71
Solyc07g062840.2.1	Tomato	nucleus	43.87	40.62
Solyc06g069710.2.1	Tomato	nucleus	39.88	38.35
Solyc08g074300.2.1	Tomato	nucleus	39.57	37.83
Solyc03g115850.2.1	Tomato	nucleus	37.12	37.12
Solyc02g088180.2.1	Tomato	cytosol	35.58	36.36
Solyc09g025310.2.1	Tomato	nucleus	27.91	33.7
Solyc06g008360.2.1	Tomato	nucleus	26.99	31.21
Solyc06g069100.1.1	Tomato	nucleus	46.93	30.78
Solyc07g066330.2.1	Tomato	nucleus	32.21	30.7

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441
InterPro:IPR036093	UniProt:K4DEA5	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31744	PANTHER:PTHR31744:SF3	SUPFAM:SSF101941	EnsemblPlantsGene:Solyc12g036480.1	EnsemblPlants:Solyc12g036480.1.1	UniParc:UPI000276A1A6
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:51943109..51945972

Molecular Weight (calculated)

37082.3 Da

IEP (calculated)

6.681

GRAVY (calculated)

-0.668

Length

326 amino acids

Sequence
(BLAST)

001: MDENLPPGFR FHPTDEELIT CYLNNKISDF NFTTRAIADV DLNKSEPWDL PAKASMGEKE WYFFSLKDRK YPTGLRTNRA TEAGYWKTTG KDKEIYRGGT
101: GVLVGMKKTL VFYRGRAPKG EKTNWVMHEY RIETTFGYKP SKEEWVVCRV FQKSSTVKKP QPTSSSPLSL ESPCDTNYTI TNELGDIELP FNFNYLTTTP
201: STAINNISLH NYNNDNINLA AATREANSHP LLPWSSNLLS SNLSSVNSLL FRALQLKSYS PREQATTTHD YAFMLPQENI ITTQFGNDFA VNNIGAPSSS
301: TVLDNSVQQQ QQQQQEQSYK LDSNIW

Best Arabidopsis Sequence Match ( AT3G18400.1 )
(BLAST)

001: MEENLPPGFR FHPTDEELIT HYLCRKVSDI GFTGKAVVDV DLNKCEPWDL PAKASMGEKE WYFFSQRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYRSGV
101: LVGMKKTLVF YKGRAPKGEK SNWVMHEYRL ESKQPFNPTN KEEWVVCRVF EKSTAAKKAQ EQQPQSSQPS FGSPCDANSS MANEFEDIDE LPNLNSNSST
201: IDYNNHIHQY SQRNVYSEDN TTSTAGLNMN MNMASTNLQS WTTSLLGPPL SPINSLLLKA FQIRNSYSFP KEMIPSFNHS SLQQGVSNMI QNASSSSQVQ
301: PQPQEEAFNM DSIW

Arabidopsis Description

anac058NAC domain containing protein 58 [Source:UniProtKB/TrEMBL;Acc:Q9LS50]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.