Factsheet for Os03t0327100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0854800-03
Os10t0577800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04060.1	Os03t0854800-03	AT1G32230.1	19548978
AT3G04060.1	Os10t0577800-01	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G130600.1	Wheat	nucleus	72.63	76.02
TraesCS4D01G176000.1	Wheat	nucleus	72.07	75.44
TraesCS4B01G174000.1	Wheat	cytosol	71.23	74.78
HORVU4Hr1G051360.3	Barley	nucleus	71.51	73.99
EER92328	Sorghum	cytosol	69.83	70.22
Zm00001d047554_P001	Maize	cytoskeleton, cytosol, nucleus	68.16	70.11
Zm00001d028995_P001	Maize	cytosol	66.48	67.81
CDY29982	Canola	cytosol	29.89	62.21
Os07t0684800-01	Rice	cytosol	48.88	58.14
GSMUA_Achr10P...	Banana	cytosol	34.36	53.95
GSMUA_Achr5P07600_001	Banana	cytosol	36.59	53.25
GSMUA_Achr9P16920_001	Banana	cytosol	42.74	50.0
GSMUA_Achr3P18020_001	Banana	nucleus	38.83	47.44
GSMUA_Achr3P09520_001	Banana	cytosol	41.34	46.54
GSMUA_Achr7P18330_001	Banana	nucleus	39.66	46.1
GSMUA_Achr6P32290_001	Banana	nucleus	44.41	45.95
GSMUA_Achr6P08600_001	Banana	nucleus	43.58	44.96
CDY02636	Canola	nucleus	42.18	44.81
CDY53250	Canola	nucleus	41.9	44.64
AT5G18270.1	Thale cress	nucleus	41.62	44.48
Bra023669.1-P	Field mustard	nucleus	41.62	44.35
Bra002148.1-P	Field mustard	nucleus	41.34	44.05
Bra006449.1-P	Field mustard	nucleus	41.34	44.05
CDY51238	Canola	nucleus	41.34	43.92
CDX70804	Canola	nucleus	41.34	43.92
AT3G04060.1	Thale cress	nucleus	41.34	43.79
Bra040153.1-P	Field mustard	nucleus	40.22	41.98
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	40.22	41.86
CDY50879	Canola	cytoskeleton, cytosol, nucleus	39.94	41.69
CDY42901	Canola	nucleus	39.11	40.7
VIT_08s0007g07640.t01	Wine grape	nucleus	45.53	40.45
KRG94783	Soybean	nucleus	44.69	39.51
Os01t0104500-01	Rice	cytosol, mitochondrion, nucleus	35.2	39.38
KRH08479	Soybean	nucleus	44.97	39.27
KRH06738	Soybean	nucleus	44.13	38.82
KRH70130	Soybean	nucleus	44.41	38.78
Os04t0460600-02	Rice	cytosol, mitochondrion, nucleus	37.15	38.78
Os02t0579000-01	Rice	mitochondrion	36.59	37.97
Os01t0393100-01	Rice	nucleus	34.36	37.5
Os03t0624600-01	Rice	cytosol, mitochondrion, nucleus	33.52	37.15
Os04t0515900-01	Rice	nucleus	27.09	34.89
Os06t0675600-01	Rice	nucleus	29.61	34.87
Os08t0200600-01	Rice	nucleus	28.49	34.81
Os09t0497900-01	Rice	cytosol	33.52	34.09
Os12t0610600-01	Rice	nucleus	30.45	32.73
Os06t0344900-00	Rice	cytosol, nucleus, plastid	32.96	31.64
Os12t0123800-01	Rice	nucleus	34.64	31.31
Os08t0511200-00	Rice	cytosol	30.17	31.12
Os03t0109000-01	Rice	nucleus	25.42	30.64
Os10t0477600-01	Rice	nucleus	25.98	28.7
Os02t0810900-01	Rice	nucleus	25.7	27.79
Os11t0127000-01	Rice	nucleus	22.07	26.78
GSMUA_Achr8P21470_001	Banana	nucleus	38.55	26.74

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	EntrezGene:4332714	ProteinID:AAN64996.1	ProteinID:ABF95724.1	EMBL:AK065989
ProteinID:BAF11908.1	ProteinID:BAS84001.1	ProteinID:EAZ26780.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	EMBL:JN185445	InterPro:NAC-dom	InterPro:NAC_dom_sf	EnsemblPlantsGene:Os03g0327100
EnsemblPlants:Os03t0327100-01	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31744	PANTHER:PTHR31744:SF47	UniProt:Q8H7M4
SUPFAM:SSF101941	UniParc:UPI00000AD2D9	RefSeq:XP_015633121.1	SEG:seg	:	:

Description

CUP SHAPED COTYLEDON 1Similar to CUC1. (Os03t0327100-01)

Coordinates

chr3:-:11937445..11939473

Molecular Weight (calculated)

39201.4 Da

IEP (calculated)

5.608

GRAVY (calculated)

-0.348

Length

358 amino acids

Sequence
(BLAST)

001: MSEVSVMAEV EETAAAAPLD LPPGFRFHPT DEEIVSHYLT PKALNHRFSS GVIGDVDLNK CEPWHLPAMA KMGEKEWYFF CHKDRKYPTG TRTNRATESG
101: YWKATGKDKE IFRGRGILVG MKKTLVFYLG RAPRGEKTGW VMHEFRLEGK LPSQLPRSAK DQWAVCKVFN KELALAAKNG PMAVTEATAD DAGIERVGSF
201: SFLSDFIDPA ELPPLMDPSF VADIDGVDDA KVSASTSGQA AIAAGFHVAS QVMSYQQVKM EEPLPLPYLH QQPPRMLHSG QYFSLPAVHP GDLTPSAIRR
301: YCKAEQVSGQ TSALSASRDT GLSTDPNAAG CAEISSAPTS QPFPEFDDGI LGLDDFWN

Best Arabidopsis Sequence Match ( AT3G04060.1 )
(BLAST)

001: MVEEGGVVVN QGGDQEVVDL PPGFRFHPTD EEIITHYLKE KVFNIRFTAA AIGQADLNKN EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATVSGY
101: WKATGKDKEI FRGKGCLVGM KKTLVFYTGR APKGEKTNWV MHEYRLDGKY SYHNLPKTAR DEWVVCRVFH KNAPSTTITT TKQLSRIDSL DNIDHLLDFS
201: SLPPLIDPGF LGQPGPSFSG ARQQHDLKPV LHHPTTAPVD NTYLPTQALN FPYHSVHNSG SDFGYGAGSG NNNKGMIKLE HSLVSVSQET GLSSDVNTTA
301: TPEISSYPMM MNPAMMDGSK SACDGLDDLI FWEDLYTS

Arabidopsis Description

anac046NAC domain-containing protein 46 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.