Factsheet for TraesCS4A01G130600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04060.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT3G04060.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G176000.1	Wheat	nucleus	97.37	97.37
TraesCS4B01G174000.1	Wheat	cytosol	96.49	96.77
HORVU4Hr1G051360.3	Barley	nucleus	92.4	91.33
Zm00001d047554_P001	Maize	cytoskeleton, cytosol, nucleus	76.02	74.71
EER92328	Sorghum	cytosol	76.61	73.6
Zm00001d028995_P001	Maize	cytosol	75.44	73.5
Os03t0327100-01	Rice	nucleus	76.02	72.63
CDY29982	Canola	cytosol	32.16	63.95
GSMUA_Achr5P07600_001	Banana	cytosol	39.47	54.88
TraesCS2A01G101200.1	Wheat	nucleus	44.15	54.71
GSMUA_Achr10P...	Banana	cytosol	35.96	53.95
TraesCS2A01G101400.1	Wheat	cytosol	52.05	50.42
GSMUA_Achr9P16920_001	Banana	cytosol	45.03	50.33
TraesCS2A01G101100.1	Wheat	cytosol, nucleus, plastid	51.17	50.29
TraesCS3A01G077900.1	Wheat	nucleus	30.99	49.53
GSMUA_Achr6P08600_001	Banana	nucleus	49.42	48.7
GSMUA_Achr3P09520_001	Banana	cytosol	45.03	48.43
GSMUA_Achr6P32290_001	Banana	nucleus	48.83	48.27
GSMUA_Achr7P18330_001	Banana	nucleus	42.98	47.73
CDY02636	Canola	nucleus	46.49	47.18
CDY53250	Canola	nucleus	46.2	47.02
Bra023669.1-P	Field mustard	nucleus	45.91	46.73
Bra002148.1-P	Field mustard	nucleus	45.61	46.43
TraesCS2A01G101000.1	Wheat	cytosol, nucleus, plastid	51.75	46.34
CDX70804	Canola	nucleus	45.32	45.99
Bra006449.1-P	Field mustard	nucleus	45.03	45.83
CDY51238	Canola	nucleus	45.03	45.7
AT5G18270.1	Thale cress	nucleus	44.74	45.67
GSMUA_Achr3P18020_001	Banana	nucleus	38.6	45.05
AT3G04060.1	Thale cress	nucleus	44.15	44.67
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	43.86	43.6
Bra040153.1-P	Field mustard	nucleus	43.57	43.44
CDY50879	Canola	cytoskeleton, cytosol, nucleus	43.27	43.15
CDY42901	Canola	nucleus	42.69	42.44
VIT_08s0007g07640.t01	Wine grape	nucleus	49.42	41.94
KRG94783	Soybean	nucleus	48.54	40.99
KRH06738	Soybean	nucleus	48.25	40.54
TraesCS4A01G242700.1	Wheat	cytosol, mitochondrion, nucleus	33.92	38.8
TraesCS7A01G152500.1	Wheat	nucleus	40.06	38.48
KRH08479	Soybean	nucleus	45.91	38.29
KRH70130	Soybean	nucleus	45.32	37.8
TraesCS7A01G194700.1	Wheat	nucleus	38.3	37.54
TraesCS5A01G245900.2	Wheat	nucleus	35.96	37.5
TraesCS2A01G338300.1	Wheat	nucleus	38.6	37.18
TraesCS7A01G189200.1	Wheat	nucleus	37.72	36.96
TraesCS7A01G569300.1	Wheat	cytosol	37.72	35.64
TraesCS5A01G049100.2	Wheat	cytosol, nucleus, peroxisome	30.12	33.66
TraesCS7A01G305200.1	Wheat	cytosol	28.36	33.56
TraesCS7A01G569100.1	Wheat	nucleus	37.13	33.42
TraesCS7A01G334800.1	Wheat	nucleus	35.38	33.33
TraesCS5A01G275900.1	Wheat	nucleus	35.38	32.97
TraesCS7A01G464100.1	Wheat	nucleus	29.53	32.9
TraesCS7A01G464800.1	Wheat	nucleus	29.53	32.79
TraesCS5A01G143100.1	Wheat	nucleus	38.3	32.51
TraesCS7A01G247600.1	Wheat	extracellular	31.58	32.05
TraesCS2A01G382400.1	Wheat	nucleus	27.78	30.65
TraesCS6A01G378600.1	Wheat	nucleus	27.19	30.39
TraesCS2A01G462500.1	Wheat	plastid	29.53	30.15
TraesCS6A01G378500.1	Wheat	nucleus	26.61	29.26
GSMUA_Achr8P21470_001	Banana	nucleus	42.11	27.91

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31744	PANTHER:PTHR31744:SF47	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS4A01G130600	EnsemblPlants:TraesCS4A01G130600.1	SEG:seg

Description

No Description!

Coordinates

chr4A:+:173630228..173632051

Molecular Weight (calculated)

37647.2 Da

IEP (calculated)

5.967

GRAVY (calculated)

-0.521

Length

342 amino acids

Sequence
(BLAST)

001: MSEASVINQA EVEDAAAAAG LDLPPGFRFH PTDEEIISHY LTPKALDHRF CSGVIGEVDL NKCEPWHLPG KAKMGEKEWY FFCHKDRKYP TGTRTNRATE
101: SGYWKATGKD KEIFRGRGLL VGMKKTLVFY LGRAPRGEKT GWVMHEFRLE GKLPHPLPRS AKDEWAVSKV FNKELTATNG AMAAADAGIE RVSSFGFITD
201: FLDSGELPPL MDPPLGGDVD QVTDFKSTSA YATGAHSGHQ VKMEQHMPQQ PPHMMYSSPY FSLPAANSGD MSPAIRRYCK AEQVSGQTSA LSPSRETGLS
301: TDPNAAGCAE ISSAATPSSQ NQEFLDEFDE YPALNLADIW KY

Best Arabidopsis Sequence Match ( AT3G04060.1 )
(BLAST)

001: MVEEGGVVVN QGGDQEVVDL PPGFRFHPTD EEIITHYLKE KVFNIRFTAA AIGQADLNKN EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATVSGY
101: WKATGKDKEI FRGKGCLVGM KKTLVFYTGR APKGEKTNWV MHEYRLDGKY SYHNLPKTAR DEWVVCRVFH KNAPSTTITT TKQLSRIDSL DNIDHLLDFS
201: SLPPLIDPGF LGQPGPSFSG ARQQHDLKPV LHHPTTAPVD NTYLPTQALN FPYHSVHNSG SDFGYGAGSG NNNKGMIKLE HSLVSVSQET GLSSDVNTTA
301: TPEISSYPMM MNPAMMDGSK SACDGLDDLI FWEDLYTS

Arabidopsis Description

anac046NAC domain-containing protein 46 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.