Factsheet for TraesCS2A01G101100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04060.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT3G04060.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G118200.1	Wheat	cytosol, nucleus, plastid	90.23	89.46
TraesCS2A01G101000.1	Wheat	cytosol, nucleus, plastid	97.13	88.48
TraesCS2B01G118400.1	Wheat	cytosol, nucleus, plastid	86.49	85.75
TraesCS2A01G101400.1	Wheat	cytosol	79.6	78.47
TraesCS2B01G118300.1	Wheat	cytosol	86.21	77.32
TraesCS2A01G101200.1	Wheat	nucleus	58.91	74.28
HORVU2Hr1G017350.1	Barley	nucleus	83.33	73.05
HORVU2Hr1G017370.1	Barley	cytosol, nucleus, plastid	81.9	67.06
HORVU2Hr1G017360.1	Barley	nucleus	28.74	65.79
CDY29982	Canola	cytosol	29.31	59.3
EER97754	Sorghum	nucleus	56.03	58.56
Os07t0684800-01	Rice	cytosol	50.29	58.14
Zm00001d022517_P001	Maize	nucleus	51.72	56.6
GSMUA_Achr10P...	Banana	cytosol	33.62	51.32
TraesCS4A01G130600.1	Wheat	nucleus	50.29	51.17
GSMUA_Achr5P07600_001	Banana	cytosol	35.34	50.0
TraesCS3A01G077900.1	Wheat	nucleus	30.17	49.07
GSMUA_Achr3P18020_001	Banana	nucleus	38.22	45.39
GSMUA_Achr9P16920_001	Banana	cytosol	36.49	41.5
GSMUA_Achr3P09520_001	Banana	cytosol	36.49	39.94
GSMUA_Achr7P18330_001	Banana	nucleus	35.34	39.94
GSMUA_Achr6P32290_001	Banana	nucleus	39.37	39.6
GSMUA_Achr6P08600_001	Banana	nucleus	39.08	39.19
CDY53250	Canola	nucleus	37.64	38.99
CDY02636	Canola	nucleus	37.64	38.87
AT3G04060.1	Thale cress	nucleus	37.64	38.76
Bra006449.1-P	Field mustard	nucleus	37.36	38.69
Bra023669.1-P	Field mustard	nucleus	37.36	38.69
CDY51238	Canola	nucleus	37.36	38.58
CDX70804	Canola	nucleus	37.36	38.58
TraesCS4A01G242700.1	Wheat	cytosol, mitochondrion, nucleus	33.05	38.46
Bra002148.1-P	Field mustard	nucleus	37.07	38.39
AT5G18270.1	Thale cress	nucleus	36.78	38.21
Bra040153.1-P	Field mustard	nucleus	36.49	37.03
CDY50879	Canola	cytoskeleton, cytosol, nucleus	36.21	36.73
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	35.92	36.34
CDY42901	Canola	nucleus	35.92	36.34
KRG94783	Soybean	nucleus	41.95	36.05
KRH06738	Soybean	nucleus	41.95	35.87
KRH08479	Soybean	nucleus	41.09	34.88
TraesCS5A01G245900.2	Wheat	nucleus	32.76	34.76
KRH70130	Soybean	nucleus	40.8	34.63
TraesCS7A01G305200.1	Wheat	cytosol	28.45	34.26
VIT_08s0007g07640.t01	Wine grape	nucleus	39.66	34.24
TraesCS5A01G049100.2	Wheat	cytosol, nucleus, peroxisome	29.6	33.66
TraesCS7A01G464800.1	Wheat	nucleus	29.6	33.44
TraesCS7A01G464100.1	Wheat	nucleus	29.02	32.9
TraesCS7A01G152500.1	Wheat	nucleus	33.62	32.87
TraesCS7A01G189200.1	Wheat	nucleus	32.76	32.66
TraesCS7A01G569300.1	Wheat	cytosol	33.91	32.6
TraesCS2A01G338300.1	Wheat	nucleus	33.05	32.39
TraesCS7A01G194700.1	Wheat	nucleus	32.47	32.38
TraesCS7A01G334800.1	Wheat	nucleus	33.33	31.96
TraesCS5A01G275900.1	Wheat	nucleus	33.62	31.88
TraesCS2A01G382400.1	Wheat	nucleus	28.16	31.61
TraesCS7A01G569100.1	Wheat	nucleus	34.2	31.32
TraesCS6A01G378600.1	Wheat	nucleus	26.72	30.39
TraesCS7A01G247600.1	Wheat	extracellular	28.74	29.67
TraesCS2A01G462500.1	Wheat	plastid	28.45	29.55
TraesCS6A01G378500.1	Wheat	nucleus	26.15	29.26
TraesCS5A01G143100.1	Wheat	nucleus	33.62	29.03
GSMUA_Achr8P21470_001	Banana	nucleus	39.37	26.55

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31744	PANTHER:PTHR31744:SF47	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS2A01G101100	EnsemblPlants:TraesCS2A01G101100.1	SEG:seg

Description

No Description!

Coordinates

chr2A:+:54111792..54113345

Molecular Weight (calculated)

38476.8 Da

IEP (calculated)

5.263

GRAVY (calculated)

-0.430

Length

348 amino acids

Sequence
(BLAST)

001: MSDVTAVMDL ALPPGFRFHP TDEEVVTHYL TRKVLRESFS CQVITDVDLN KNEPWELPGK AKMGEKEWFF FVHKGRKYPT GTRTNRATKK GYWKATGKDK
101: EIFRGKGRDA VLVGMKKTLV FYTGRAPSGG KTPWVMHEYR LEGQLPHRLP HTAKDDWAVC RVFNKDLAAK NAPPQMAPAA DGAMEDPLAF LDDLLIDTNL
201: NLFDDADLPM LMDSPSGADD FAGASSSTSS AALPLEPDAE HLTIKMEPPP QQQQQMQSPD YFMPATANGN LGGAGYSTYQ AVVDQQAAIR MYCKPKAEVA
301: SSSALGLDMG ALAGADTSFL MPSSRSYLDL EELFRGEALM DYSDMWKI

Best Arabidopsis Sequence Match ( AT3G04060.1 )
(BLAST)

001: MVEEGGVVVN QGGDQEVVDL PPGFRFHPTD EEIITHYLKE KVFNIRFTAA AIGQADLNKN EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATVSGY
101: WKATGKDKEI FRGKGCLVGM KKTLVFYTGR APKGEKTNWV MHEYRLDGKY SYHNLPKTAR DEWVVCRVFH KNAPSTTITT TKQLSRIDSL DNIDHLLDFS
201: SLPPLIDPGF LGQPGPSFSG ARQQHDLKPV LHHPTTAPVD NTYLPTQALN FPYHSVHNSG SDFGYGAGSG NNNKGMIKLE HSLVSVSQET GLSSDVNTTA
301: TPEISSYPMM MNPAMMDGSK SACDGLDDLI FWEDLYTS

Arabidopsis Description

anac046NAC domain-containing protein 46 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.