Factsheet for TraesCS3A01G077900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04060.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT3G04060.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G078500.1	Wheat	nucleus	91.59	87.11
TraesCS3B01G092800.1	Wheat	cytosol	83.64	84.04
HORVU3Hr1G014090.1	Barley	nucleus	81.78	80.65
CDY29982	Canola	cytosol	47.2	58.72
EES02626	Sorghum	cytosol	38.32	57.34
GSMUA_Achr10P...	Banana	cytosol	50.0	46.93
TraesCS5A01G245900.2	Wheat	nucleus	71.03	46.34
GSMUA_Achr5P07600_001	Banana	cytosol	50.0	43.5
GSMUA_Achr9P16920_001	Banana	cytosol	53.27	37.25
GSMUA_Achr3P18020_001	Banana	nucleus	50.93	37.2
TraesCS2A01G101200.1	Wheat	nucleus	47.2	36.59
TraesCS7A01G152500.1	Wheat	nucleus	59.81	35.96
Os01t0104500-01	Rice	cytosol, mitochondrion, nucleus	53.74	35.94
GSMUA_Achr7P18330_001	Banana	nucleus	50.93	35.39
GSMUA_Achr3P09520_001	Banana	cytosol	52.34	35.22
Os01t0393100-01	Rice	nucleus	53.74	35.06
AT5G18270.1	Thale cress	nucleus	53.27	34.03
TraesCS4A01G242700.1	Wheat	cytosol, mitochondrion, nucleus	47.2	33.78
CDY53250	Canola	nucleus	52.34	33.33
Bra023669.1-P	Field mustard	nucleus	52.34	33.33
CDY02636	Canola	nucleus	52.34	33.23
AT3G04060.1	Thale cress	nucleus	52.34	33.14
Bra006449.1-P	Field mustard	nucleus	51.87	33.04
CDX70804	Canola	nucleus	51.87	32.94
CDY51238	Canola	nucleus	51.87	32.94
TraesCS7A01G569300.1	Wheat	cytosol	55.14	32.6
Bra002148.1-P	Field mustard	nucleus	50.93	32.44
TraesCS7A01G189200.1	Wheat	nucleus	52.34	32.09
TraesCS7A01G194700.1	Wheat	nucleus	52.34	32.09
GSMUA_Achr6P08600_001	Banana	nucleus	51.87	31.99
CDY42901	Canola	nucleus	50.93	31.69
CDY50879	Canola	cytoskeleton, cytosol, nucleus	50.47	31.49
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	50.47	31.4
Bra040153.1-P	Field mustard	nucleus	50.0	31.2
TraesCS4A01G130600.1	Wheat	nucleus	49.53	30.99
GSMUA_Achr6P32290_001	Banana	nucleus	50.0	30.92
TraesCS7A01G569100.1	Wheat	nucleus	54.67	30.79
TraesCS2A01G101100.1	Wheat	cytosol, nucleus, plastid	49.07	30.17
TraesCS5A01G275900.1	Wheat	nucleus	50.47	29.43
KRG94783	Soybean	nucleus	55.61	29.38
TraesCS7A01G247600.1	Wheat	extracellular	46.26	29.38
KRH06738	Soybean	nucleus	55.61	29.24
TraesCS2A01G101400.1	Wheat	cytosol	48.13	29.18
KRH08479	Soybean	nucleus	55.61	29.02
VIT_08s0007g07640.t01	Wine grape	nucleus	54.21	28.78
KXG28945	Sorghum	cytoskeleton, nucleus, peroxisome	48.6	28.03
Zm00001d040189_P002	Maize	mitochondrion, nucleus, peroxisome	50.93	27.88
TraesCS5A01G049100.2	Wheat	cytosol, nucleus, peroxisome	39.72	27.78
TraesCS7A01G305200.1	Wheat	cytosol	37.38	27.68
KRH70130	Soybean	nucleus	52.8	27.56
OQU89451	Sorghum	cytosol	47.66	27.42
TraesCS7A01G464100.1	Wheat	nucleus	39.25	27.36
TraesCS2A01G338300.1	Wheat	nucleus	45.33	27.32
TraesCS6A01G378600.1	Wheat	nucleus	38.78	27.12
TraesCS2A01G382400.1	Wheat	nucleus	38.78	26.77
EES02651	Sorghum	nucleus	50.0	26.75
TraesCS2A01G101000.1	Wheat	cytosol, nucleus, plastid	47.66	26.7
TraesCS7A01G464800.1	Wheat	nucleus	38.32	26.62
TraesCS7A01G334800.1	Wheat	nucleus	44.86	26.45
TraesCS6A01G378500.1	Wheat	nucleus	37.85	26.05
EES17917	Sorghum	cytosol	48.6	25.87
TraesCS5A01G143100.1	Wheat	nucleus	46.73	24.81
TraesCS2A01G462500.1	Wheat	plastid	37.85	24.18
Zm00001d008403_P001	Maize	plastid	35.51	23.6
GSMUA_Achr8P21470_001	Banana	nucleus	52.34	21.71

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31744	PANTHER:PTHR31744:SF23	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS3A01G077900	EnsemblPlants:TraesCS3A01G077900.1	SEG:seg

Description

No Description!

Coordinates

chr3A:-:50382391..50383162

Molecular Weight (calculated)

24128.9 Da

IEP (calculated)

9.486

GRAVY (calculated)

-0.626

Length

214 amino acids

Sequence
(BLAST)

001: MVDHLQVQQQ QQQLELPMGF RFHPTDEEII TSYLAPKILN PAFDATAIGE VDLNKNEPWE LPKKAKMGEN EWYFYCQKDR KYPTGIRTNR ATKAGYWKTT
101: GKDKEIVNPH CTSMLIGMKK TLVFYKGRAP SGEKTNWVMH EYRLKINKQS TTSLPSAIGN AASINMSSKE YVVCRIFHKN AGSRLSSMVS HEGNGGATPT
201: DKIWSMSMGT DGAC

Best Arabidopsis Sequence Match ( AT3G04060.1 )
(BLAST)

001: MVEEGGVVVN QGGDQEVVDL PPGFRFHPTD EEIITHYLKE KVFNIRFTAA AIGQADLNKN EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATVSGY
101: WKATGKDKEI FRGKGCLVGM KKTLVFYTGR APKGEKTNWV MHEYRLDGKY SYHNLPKTAR DEWVVCRVFH KNAPSTTITT TKQLSRIDSL DNIDHLLDFS
201: SLPPLIDPGF LGQPGPSFSG ARQQHDLKPV LHHPTTAPVD NTYLPTQALN FPYHSVHNSG SDFGYGAGSG NNNKGMIKLE HSLVSVSQET GLSSDVNTTA
301: TPEISSYPMM MNPAMMDGSK SACDGLDDLI FWEDLYTS

Arabidopsis Description

anac046NAC domain-containing protein 46 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.