Factsheet for TraesCS3B01G092800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04060.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT3G04060.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G078500.1	Wheat	nucleus	89.67	84.89
TraesCS3A01G077900.1	Wheat	nucleus	84.04	83.64
HORVU3Hr1G014090.1	Barley	nucleus	83.1	81.57
CDY29982	Canola	cytosol	47.89	59.3
EES02626	Sorghum	cytosol	36.15	53.85
GSMUA_Achr10P...	Banana	cytosol	52.11	48.68
GSMUA_Achr5P07600_001	Banana	cytosol	52.11	45.12
TraesCS6B01G416500.1	Wheat	nucleus	36.62	40.84
TraesCS7B01G094000.1	Wheat	nucleus	49.77	38.83
GSMUA_Achr9P16920_001	Banana	cytosol	54.93	38.24
GSMUA_Achr3P18020_001	Banana	nucleus	51.64	37.54
GSMUA_Achr7P18330_001	Banana	nucleus	52.58	36.36
GSMUA_Achr3P09520_001	Banana	cytosol	53.99	36.16
TraesCS5B01G243300.1	Wheat	nucleus	45.07	35.82
TraesCS7B01G056300.1	Wheat	nucleus	59.15	35.29
Os01t0104500-01	Rice	cytosol, mitochondrion, nucleus	52.58	35.0
AT5G18270.1	Thale cress	nucleus	54.93	34.93
TraesCS7B01G100300.1	Wheat	nucleus	52.11	34.37
Os01t0393100-01	Rice	nucleus	52.58	34.15
CDY53250	Canola	nucleus	53.52	33.93
Bra023669.1-P	Field mustard	nucleus	53.52	33.93
Bra006449.1-P	Field mustard	nucleus	53.52	33.93
CDY51238	Canola	nucleus	53.52	33.83
CDX70804	Canola	nucleus	53.52	33.83
CDY02636	Canola	nucleus	53.52	33.83
TraesCS7B01G489500.2	Wheat	cytosol	54.93	33.72
TraesCS4B01G072400.1	Wheat	cytosol, mitochondrion, nucleus	46.95	33.44
AT3G04060.1	Thale cress	nucleus	53.05	33.43
Bra002148.1-P	Field mustard	nucleus	52.58	33.33
GSMUA_Achr6P08600_001	Banana	nucleus	53.99	33.14
GSMUA_Achr6P32290_001	Banana	nucleus	52.58	32.37
CDY42901	Canola	nucleus	51.64	31.98
TraesCS4B01G174000.1	Wheat	cytosol	51.17	31.96
TraesCS3B01G092900.3	Wheat	nucleus	53.52	31.93
CDY50879	Canola	cytoskeleton, cytosol, nucleus	51.17	31.78
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	51.17	31.69
Bra040153.1-P	Field mustard	nucleus	50.7	31.49
TraesCS2B01G118200.1	Wheat	cytosol, nucleus, plastid	49.77	30.2
KRG94783	Soybean	nucleus	57.28	30.12
TraesCS2B01G118500.1	Wheat	cytosol	49.77	30.11
KRH06738	Soybean	nucleus	57.28	29.98
TraesCS7B01G143900.1	Wheat	nucleus	46.48	29.64
TraesCS2B01G118400.1	Wheat	cytosol, nucleus, plastid	48.83	29.63
VIT_08s0007g07640.t01	Wine grape	nucleus	55.87	29.53
TraesCS2B01G484100.1	Wheat	cytosol, nucleus, plastid	39.91	29.51
TraesCS5B01G275200.1	Wheat	nucleus	50.7	29.35
KRH08479	Soybean	nucleus	56.34	29.27
TraesCS7B01G365300.1	Wheat	nucleus	41.78	29.18
TraesCS5B01G054200.2	Wheat	cytosol, nucleus, peroxisome	41.78	28.99
TraesCS7B01G364600.1	Wheat	nucleus	41.78	28.99
TraesCS7B01G205600.1	Wheat	cytosol	38.5	28.08
KRH70130	Soybean	nucleus	53.99	28.05
TraesCS6B01G416400.1	Wheat	nucleus	38.97	27.95
KXG28945	Sorghum	cytoskeleton, nucleus, peroxisome	48.36	27.76
TraesCS7B01G246300.1	Wheat	nucleus	46.95	27.62
EES02651	Sorghum	nucleus	51.64	27.5
TraesCS2B01G343600.1	Wheat	nucleus	45.54	27.4
TraesCS6B01G416300.1	Wheat	nucleus	39.44	27.18
Zm00001d040189_P002	Maize	mitochondrion, nucleus, peroxisome	49.77	27.11
TraesCS2B01G399700.1	Wheat	cytosol, mitochondrion, nucleus	38.97	27.04
OQU89451	Sorghum	cytosol	46.95	26.88
TraesCS2B01G118300.1	Wheat	cytosol	47.89	26.29
EES17917	Sorghum	cytosol	48.36	25.62
TraesCS5B01G141900.1	Wheat	nucleus	47.89	25.44
Zm00001d008403_P001	Maize	plastid	36.62	24.22
GSMUA_Achr8P21470_001	Banana	nucleus	53.05	21.9

Protein Annotations

EnsemblPlants:TraesCS3B01G092800.1	EnsemblPlantsGene:TraesCS3B01G092800	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PANTHER:PTHR31744
PANTHER:PTHR31744:SF23	PFAM:PF02365	PFscan:PS51005	SUPFAM:SSF101941	MapMan:15.5.17	:

Description

No Description!

Coordinates

chr3B:-:61896066..61896836

Molecular Weight (calculated)

23508.0 Da

IEP (calculated)

9.094

GRAVY (calculated)

-0.600

Length

213 amino acids

Sequence
(BLAST)

001: MLELPPGFRF HPTDEEIITS YLAPKILNPA FNATAIGEVD LNKNEPWELP NKAKMGENEW YFYCQKDRKY PTGIRTNRAT KAGYWKATGK DKEIVNPHCM
101: SMLMGMKKTL VFYKGRAPSG EKTNWVMHEY RLEIGKQSTS GLPTTIANAA SNNVSSKEYV VCRIFHKNTG SGVSSMVSHE DVGTGPGNND QGNGGATTTD
201: KILSMSMRTG GAC

Best Arabidopsis Sequence Match ( AT5G07680.1 )
(BLAST)

001: METFGVFHKE DDEQMDLPPG FRFHPTDEEL ITHYLHKKVL DLGFSAKAIG EVDLNKAEPW ELPYKAKIGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA
101: TGKDKEIFRG KSLVGMKKTL VFYRGRAPKG QKTNWVMHEY RLDGKLSAHN LPKTAKNEWV ICRVFHKTAG GKKIPISTLI RIGSYGTGSS LPPLTDSSPY
201: NDKTKTEPVY VPCFSNQAET RGTILNCFSN PSLSSIQPDF LQMIPLYQPQ SLNISESSNP VLTQEQSVLQ AMMENNRRQN FKTLSISQET GVSNTDNSSV
301: FEFGRKRFDH QEVPSPSSGP VDLEPFWNY

Arabidopsis Description

NAC079NAC4 [Source:UniProtKB/TrEMBL;Acc:A0A178UL34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.