Factsheet for TraesCS5B01G141900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 22082019

gfp PMID: 22082019 doi

Y Tang, M Liu, S Gao, Z Zhang, X Zhao, C Zhao, F Zhang, X Chen

Beijing Engineering and Technique Research Center of Hybrid Wheat, Beijing Academy of Agricultural and Forestry Science, Beijing 100097, People's Republic of China.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04060.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT3G04060.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G148900.1	Wheat	nucleus	95.26	95.02
TraesCS5A01G143100.1	Wheat	nucleus	95.01	94.54
HORVU5Hr1G045640.7	Barley	mitochondrion	92.27	81.32
Zm00001d005028_P001	Maize	cytosol	42.14	52.48
CDY29982	Canola	cytosol	22.19	51.74
TraesCS3B01G092800.1	Wheat	cytosol	25.44	47.89
EES07908	Sorghum	nucleus, peroxisome, plastid	46.88	47.36
Os12t0123800-01	Rice	nucleus	46.63	47.22
GSMUA_Achr10P...	Banana	cytosol	26.43	46.49
Zm00001d052390_P001	Maize	nucleus	42.89	46.36
GSMUA_Achr5P07600_001	Banana	cytosol	27.68	45.12
GSMUA_Achr7P18330_001	Banana	nucleus	31.67	41.23
GSMUA_Achr9P16920_001	Banana	cytosol	29.93	39.22
Os11t0127000-01	Rice	nucleus	28.68	38.98
TraesCS7B01G094000.1	Wheat	nucleus	26.43	38.83
TraesCS6B01G416500.1	Wheat	nucleus	18.45	38.74
GSMUA_Achr3P18020_001	Banana	nucleus	27.68	37.88
TraesCS4B01G174000.1	Wheat	cytosol	32.17	37.83
TraesCS4B01G072400.1	Wheat	cytosol, mitochondrion, nucleus	28.18	37.79
TraesCS7B01G100300.1	Wheat	nucleus	29.43	36.53
AT5G18270.1	Thale cress	nucleus	30.42	36.42
Bra023669.1-P	Field mustard	nucleus	30.17	36.01
CDY53250	Canola	nucleus	30.17	36.01
CDX70804	Canola	nucleus	30.17	35.91
CDY02636	Canola	nucleus	30.17	35.91
GSMUA_Achr3P09520_001	Banana	cytosol	28.43	35.85
GSMUA_Achr6P08600_001	Banana	nucleus	30.92	35.73
Bra006449.1-P	Field mustard	nucleus	29.93	35.71
CDY51238	Canola	nucleus	29.93	35.61
GSMUA_Achr6P32290_001	Banana	nucleus	30.67	35.55
Bra002148.1-P	Field mustard	nucleus	29.68	35.42
AT3G04060.1	Thale cress	nucleus	28.68	34.02
TraesCS7B01G489500.2	Wheat	cytosol	29.43	34.01
CDY50879	Canola	cytoskeleton, cytosol, nucleus	28.93	33.82
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	28.93	33.72
Bra040153.1-P	Field mustard	nucleus	28.68	33.53
TraesCS7B01G056300.1	Wheat	nucleus	29.68	33.33
TraesCS7B01G205600.1	Wheat	cytosol	24.19	33.22
TraesCS5B01G243300.1	Wheat	nucleus	22.19	33.21
TraesCS7B01G365300.1	Wheat	nucleus	25.19	33.11
KRG94783	Soybean	nucleus	33.42	33.09
TraesCS2B01G118200.1	Wheat	cytosol, nucleus, plastid	28.93	33.05
TraesCS7B01G364600.1	Wheat	nucleus	25.19	32.9
TraesCS5B01G275200.1	Wheat	nucleus	30.17	32.88
CDY42901	Canola	nucleus	28.18	32.85
VIT_08s0007g07640.t01	Wine grape	nucleus	32.92	32.75
KRH06738	Soybean	nucleus	33.17	32.68
TraesCS2B01G118500.1	Wheat	cytosol	28.43	32.39
TraesCS7B01G246300.1	Wheat	nucleus	29.18	32.32
TraesCS2B01G484100.1	Wheat	cytosol, nucleus, plastid	23.19	32.29
TraesCS3B01G092900.3	Wheat	nucleus	28.43	31.93
TraesCS2B01G118400.1	Wheat	cytosol, nucleus, plastid	27.93	31.91
TraesCS7B01G143900.1	Wheat	nucleus	25.94	31.14
TraesCS2B01G343600.1	Wheat	nucleus	27.18	30.79
KRH70130	Soybean	nucleus	31.42	30.73
TraesCS5B01G054200.2	Wheat	cytosol, nucleus, peroxisome	23.44	30.62
KRH08479	Soybean	nucleus	30.92	30.24
TraesCS6B01G416400.1	Wheat	nucleus	21.7	29.29
TraesCS2B01G399700.1	Wheat	cytosol, mitochondrion, nucleus	22.19	28.99
TraesCS2B01G118300.1	Wheat	cytosol	27.68	28.61
TraesCS6B01G416300.1	Wheat	nucleus	21.7	28.16
GSMUA_Achr8P21470_001	Banana	nucleus	32.17	25.0

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31744	PANTHER:PTHR31744:SF23	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS5B01G141900	EnsemblPlants:TraesCS5B01G141900.1	SEG:seg

Description

No Description!

Coordinates

chr5B:-:267759354..267761171

Molecular Weight (calculated)

43771.3 Da

IEP (calculated)

7.128

GRAVY (calculated)

-0.542

Length

401 amino acids

Sequence
(BLAST)

001: MVESIAATPS EEQGRGGGLS LPPGFRFHPT DEEIITSYLL RKFLDPSFVS RAVGEVDLNS CEPRDLPGKA NMGEKEWYFF VHKDLKYPTG SRANRATKEG
101: YWKATGKDRE IFKPRARELV GMKKTLVFYT GRAPRGAKSE WVMHEFRLEG KSRGQTMNNP KDEWVVCKVF NKKGEVKATR AADVDAEYSA VTTPNASSVV
201: DAGEGAGDFT DSMFTIDPLC YIPNSDEYTS NQLPTKTTAT TTNSAPPPYN ADYYYPSVPT TAGSFNLMSN YSLTNVPSNA QTSTAMASSV PAISGSSWQH
301: MLMNTAPHGM MSRRSYDVNL HEQQAIMMRA LEGVVGAQNF GEPAKGLQTP SSRVTAGSVL PQQGKLGSYD DGELPYGNYD LASAAMTGRP AAANNLGARF
401: Y

Best Arabidopsis Sequence Match ( AT3G18400.1 )
(BLAST)

001: MEENLPPGFR FHPTDEELIT HYLCRKVSDI GFTGKAVVDV DLNKCEPWDL PAKASMGEKE WYFFSQRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYRSGV
101: LVGMKKTLVF YKGRAPKGEK SNWVMHEYRL ESKQPFNPTN KEEWVVCRVF EKSTAAKKAQ EQQPQSSQPS FGSPCDANSS MANEFEDIDE LPNLNSNSST
201: IDYNNHIHQY SQRNVYSEDN TTSTAGLNMN MNMASTNLQS WTTSLLGPPL SPINSLLLKA FQIRNSYSFP KEMIPSFNHS SLQQGVSNMI QNASSSSQVQ
301: PQPQEEAFNM DSIW

Arabidopsis Description

anac058NAC domain containing protein 58 [Source:UniProtKB/TrEMBL;Acc:Q9LS50]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.