Factsheet for TraesCS2B01G118200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04060.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT3G04060.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G101100.1	Wheat	cytosol, nucleus, plastid	89.46	90.23
TraesCS2B01G118400.1	Wheat	cytosol, nucleus, plastid	88.89	88.89
TraesCS2B01G118500.1	Wheat	cytosol	81.48	81.25
TraesCS2B01G118300.1	Wheat	cytosol	88.6	80.15
HORVU2Hr1G017350.1	Barley	nucleus	83.19	73.55
HORVU2Hr1G017360.1	Barley	nucleus	30.48	70.39
HORVU2Hr1G017370.1	Barley	cytosol, nucleus, plastid	82.62	68.24
EER97754	Sorghum	nucleus	56.7	59.76
CDY29982	Canola	cytosol	29.06	59.3
Os07t0684800-01	Rice	cytosol	50.71	59.14
Zm00001d022517_P001	Maize	nucleus	51.85	57.23
TraesCS4B01G174000.1	Wheat	cytosol	51.0	52.49
GSMUA_Achr10P...	Banana	cytosol	33.62	51.75
TraesCS3B01G092800.1	Wheat	cytosol	30.2	49.77
GSMUA_Achr5P07600_001	Banana	cytosol	34.47	49.19
GSMUA_Achr3P18020_001	Banana	nucleus	37.89	45.39
TraesCS6B01G416500.1	Wheat	nucleus	23.93	43.98
GSMUA_Achr9P16920_001	Banana	cytosol	36.18	41.5
GSMUA_Achr7P18330_001	Banana	nucleus	36.18	41.23
GSMUA_Achr6P08600_001	Banana	nucleus	40.17	40.63
GSMUA_Achr3P09520_001	Banana	cytosol	36.47	40.25
CDY53250	Canola	nucleus	38.46	40.18
GSMUA_Achr6P32290_001	Banana	nucleus	39.6	40.17
CDY02636	Canola	nucleus	38.46	40.06
AT3G04060.1	Thale cress	nucleus	38.46	39.94
Bra023669.1-P	Field mustard	nucleus	38.18	39.88
CDX70804	Canola	nucleus	38.18	39.76
Bra002148.1-P	Field mustard	nucleus	37.89	39.58
CDY51238	Canola	nucleus	37.89	39.47
AT5G18270.1	Thale cress	nucleus	37.61	39.4
Bra006449.1-P	Field mustard	nucleus	37.61	39.29
TraesCS4B01G072400.1	Wheat	cytosol, mitochondrion, nucleus	33.05	38.8
Bra040153.1-P	Field mustard	nucleus	37.04	37.9
CDY42901	Canola	nucleus	36.75	37.5
CDY50879	Canola	cytoskeleton, cytosol, nucleus	36.47	37.32
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	36.18	36.92
TraesCS7B01G094000.1	Wheat	nucleus	28.49	36.63
KRG94783	Soybean	nucleus	41.31	35.8
KRH06738	Soybean	nucleus	41.03	35.38
TraesCS2B01G484100.1	Wheat	cytosol, nucleus, plastid	28.77	35.07
KRH08479	Soybean	nucleus	40.46	34.63
VIT_08s0007g07640.t01	Wine grape	nucleus	39.6	34.49
KRH70130	Soybean	nucleus	40.17	34.39
TraesCS7B01G205600.1	Wheat	cytosol	28.49	34.25
TraesCS7B01G364600.1	Wheat	nucleus	29.91	34.2
TraesCS2B01G343600.1	Wheat	nucleus	34.47	34.18
TraesCS7B01G365300.1	Wheat	nucleus	29.63	34.1
TraesCS5B01G243300.1	Wheat	nucleus	25.64	33.58
TraesCS7B01G100300.1	Wheat	nucleus	30.77	33.44
TraesCS5B01G054200.2	Wheat	cytosol, nucleus, peroxisome	29.06	33.22
TraesCS7B01G489500.2	Wheat	cytosol	31.91	32.28
TraesCS2B01G399700.1	Wheat	cytosol, mitochondrion, nucleus	28.21	32.25
TraesCS7B01G056300.1	Wheat	nucleus	32.76	32.21
TraesCS3B01G092900.3	Wheat	nucleus	32.48	31.93
TraesCS6B01G416400.1	Wheat	nucleus	26.5	31.31
TraesCS5B01G275200.1	Wheat	nucleus	32.48	30.98
TraesCS7B01G246300.1	Wheat	nucleus	31.62	30.66
TraesCS7B01G143900.1	Wheat	nucleus	29.06	30.54
TraesCS6B01G416300.1	Wheat	nucleus	26.5	30.1
TraesCS5B01G141900.1	Wheat	nucleus	33.05	28.93
GSMUA_Achr8P21470_001	Banana	nucleus	39.03	26.55

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31744	PANTHER:PTHR31744:SF47	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS2B01G118200	EnsemblPlants:TraesCS2B01G118200.1	SEG:seg

Description

No Description!

Coordinates

chr2B:+:82361172..82362929

Molecular Weight (calculated)

38888.1 Da

IEP (calculated)

4.859

GRAVY (calculated)

-0.418

Length

351 amino acids

Sequence
(BLAST)

001: MSDVTAVMDL EVEEPQLALP PGFRFHPTDE EVVTHYLTRK VLRESFSCQV ITDVDLNKNE PWELPGLAKM GEKEWFFFVH KGRKYPTGTR TNRATKKGYW
101: KATGKDKEIF RGKGRDAVLV GMKKTLVFYT GRAPSGGKTP WVMHEYRLEG ELPHRLPRTA KDDWAVCRVF NKDLAARNAP QMAPAADGGM EDPLAFLDDL
201: LIDTDLFDDA DLPMLMDSPS GADDFAGASS STCSAALPLE PDAELPVLHP QQQQSPNYFF MPATANGNLG GAEYSPYQAM GDQQAAIRRY CKPKAEVASS
301: SALLSPSLGL DTAALAGAET SFLMPSSRSY LDLEELFRGE PLMDYSNMWK I

Best Arabidopsis Sequence Match ( AT3G04060.1 )
(BLAST)

001: MVEEGGVVVN QGGDQEVVDL PPGFRFHPTD EEIITHYLKE KVFNIRFTAA AIGQADLNKN EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATVSGY
101: WKATGKDKEI FRGKGCLVGM KKTLVFYTGR APKGEKTNWV MHEYRLDGKY SYHNLPKTAR DEWVVCRVFH KNAPSTTITT TKQLSRIDSL DNIDHLLDFS
201: SLPPLIDPGF LGQPGPSFSG ARQQHDLKPV LHHPTTAPVD NTYLPTQALN FPYHSVHNSG SDFGYGAGSG NNNKGMIKLE HSLVSVSQET GLSSDVNTTA
301: TPEISSYPMM MNPAMMDGSK SACDGLDDLI FWEDLYTS

Arabidopsis Description

anac046NAC domain-containing protein 46 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.