Factsheet for TraesCS5B01G243300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04060.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT3G04060.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29982	Canola	cytosol	29.48	45.93
TraesCS3B01G092800.1	Wheat	cytosol	35.82	45.07
EES02626	Sorghum	cytosol	21.27	39.86
GSMUA_Achr5P07600_001	Banana	cytosol	34.33	37.4
GSMUA_Achr10P...	Banana	cytosol	31.34	36.84
TraesCS7B01G094000.1	Wheat	nucleus	35.45	34.8
TraesCS6B01G416500.1	Wheat	nucleus	23.51	32.98
TraesCS7B01G100300.1	Wheat	nucleus	38.43	31.89
TraesCS5A01G245900.2	Wheat	nucleus	38.43	31.4
Os01t0104500-01	Rice	cytosol, mitochondrion, nucleus	37.31	31.25
GSMUA_Achr9P16920_001	Banana	cytosol	35.07	30.72
Os01t0393100-01	Rice	nucleus	37.31	30.49
TraesCS7B01G056300.1	Wheat	nucleus	40.3	30.25
GSMUA_Achr3P09520_001	Banana	cytosol	35.45	29.87
TraesCS3B01G092900.3	Wheat	nucleus	39.55	29.69
AT5G18270.1	Thale cress	nucleus	36.94	29.55
TraesCS7B01G489500.2	Wheat	cytosol	37.69	29.11
GSMUA_Achr3P18020_001	Banana	nucleus	31.72	29.01
AT3G04060.1	Thale cress	nucleus	36.57	28.99
GSMUA_Achr7P18330_001	Banana	nucleus	33.21	28.9
Bra006449.1-P	Field mustard	nucleus	36.19	28.87
CDY51238	Canola	nucleus	36.19	28.78
CDX70804	Canola	nucleus	36.19	28.78
TraesCS4B01G174000.1	Wheat	cytosol	36.57	28.74
CDY50879	Canola	cytoskeleton, cytosol, nucleus	36.57	28.57
CDY42901	Canola	nucleus	36.57	28.49
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	36.57	28.49
CDY02636	Canola	nucleus	35.82	28.49
CDY53250	Canola	nucleus	35.45	28.27
Bra023669.1-P	Field mustard	nucleus	35.45	28.27
GSMUA_Achr6P32290_001	Banana	nucleus	36.19	28.03
GSMUA_Achr6P08600_001	Banana	nucleus	36.19	27.95
TraesCS4B01G072400.1	Wheat	cytosol, mitochondrion, nucleus	30.97	27.76
Bra002148.1-P	Field mustard	nucleus	34.7	27.68
Bra040153.1-P	Field mustard	nucleus	34.7	27.11
TraesCS2B01G343600.1	Wheat	nucleus	34.7	26.27
TraesCS7B01G365300.1	Wheat	nucleus	29.85	26.23
TraesCS7B01G364600.1	Wheat	nucleus	29.48	25.73
TraesCS2B01G118200.1	Wheat	cytosol, nucleus, plastid	33.58	25.64
TraesCS2B01G118500.1	Wheat	cytosol	33.58	25.57
TraesCS2B01G118400.1	Wheat	cytosol, nucleus, plastid	32.84	25.07
TraesCS5B01G275200.1	Wheat	nucleus	33.58	24.46
KRG94783	Soybean	nucleus	36.94	24.44
KRH06738	Soybean	nucleus	36.94	24.32
VIT_08s0007g07640.t01	Wine grape	nucleus	36.57	24.32
TraesCS5B01G054200.2	Wheat	cytosol, nucleus, peroxisome	27.61	24.1
TraesCS7B01G205600.1	Wheat	cytosol	26.12	23.97
TraesCS2B01G484100.1	Wheat	cytosol, nucleus, plastid	25.75	23.96
TraesCS7B01G143900.1	Wheat	nucleus	29.85	23.95
KRH08479	Soybean	nucleus	36.57	23.9
OQU89451	Sorghum	cytosol	32.84	23.66
Zm00001d040189_P002	Maize	mitochondrion, nucleus, peroxisome	34.33	23.53
TraesCS7B01G246300.1	Wheat	nucleus	31.72	23.48
KRH70130	Soybean	nucleus	35.45	23.17
TraesCS6B01G416400.1	Wheat	nucleus	25.37	22.9
KXG28945	Sorghum	cytoskeleton, nucleus, peroxisome	31.34	22.64
EES02651	Sorghum	nucleus	33.58	22.5
TraesCS2B01G399700.1	Wheat	cytosol, mitochondrion, nucleus	25.75	22.48
TraesCS6B01G416300.1	Wheat	nucleus	25.75	22.33
TraesCS5B01G141900.1	Wheat	nucleus	33.21	22.19
TraesCS2B01G118300.1	Wheat	cytosol	31.72	21.91
EES17917	Sorghum	cytosol	31.34	20.9
Zm00001d008403_P001	Maize	plastid	25.0	20.81
GSMUA_Achr8P21470_001	Banana	nucleus	35.82	18.6

Protein Annotations

EnsemblPlants:TraesCS5B01G243300.1	EnsemblPlantsGene:TraesCS5B01G243300	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PANTHER:PTHR31744
PANTHER:PTHR31744:SF23	PFAM:PF02365	PFscan:PS51005	SUPFAM:SSF101941	MapMan:15.5.17	:

Description

No Description!

Coordinates

chr5B:-:423518915..423522955

Molecular Weight (calculated)

30118.0 Da

IEP (calculated)

8.724

GRAVY (calculated)

-0.510

Length

268 amino acids

Sequence
(BLAST)

001: MDGHLQVQQP KLVLPPGLRF HPTDEQIITS YLVPKPWELP KKAKMGENKW YFYCQKDHED PSGIQTNRAT KVGYWKATGK DKEILDSTPA LIGKKKTLVF
101: YKGRAPTGEE TKWVMHEYRL EIGKQLTSSL STDISKATII NASSKHRTKE SGDAIGQNAH AHLHGSRAVT SLCSLCYIDS SHGLGVSSSM APPLSVLIDS
201: SYQLHATRAR SSLIANIEMG GNQKSFYYHQ KDIMEMQMIV EQSFMVGVAR EWAIIHVYEG GQHDWTEQ

Best Arabidopsis Sequence Match ( AT3G29035.1 )
(BLAST)

001: MDYKVSRSGE IVEGEVEDSE KIDLPPGFRF HPTDEELITH YLRPKVVNSF FSAIAIGEVD LNKVEPWDLP WKAKLGEKEW YFFCVRDRKY PTGLRTNRAT
101: KAGYWKATGK DKEIFKGKSL VGMKKTLVFY KGRAPKGVKT NWVMHEYRLE GKFAIDNLSK TAKNECVISR VFHTRTDGTK EHMSVGLPPL MDSSPYLKSR
201: GQDSLAGTTL GGLLSHVTYF SDQTTDDKSL VADFKTTMFG SGSTNFLPNI GSLLDFDPLF LQNNSSVLKM LLDNEETQFK KNLHNSGSSE SELTASSWQG
301: HNSYGSTGPV NLDCVWKF

Arabidopsis Description

NAC59NAC domain-containing protein 59 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJW3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.