Factsheet for TraesCS5A01G245900.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04060.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT3G04060.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT3G04060.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT3G04060.1	TraesCS5D01G551800.3	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G077900.1	Wheat	nucleus	46.34	71.03
CDY29982	Canola	cytosol	30.49	58.14
EES02626	Sorghum	cytosol	25.0	57.34
GSMUA_Achr10P...	Banana	cytosol	32.32	46.49
GSMUA_Achr5P07600_001	Banana	cytosol	34.76	46.34
GSMUA_Achr9P16920_001	Banana	cytosol	39.63	42.48
GSMUA_Achr3P09520_001	Banana	cytosol	39.02	40.25
GSMUA_Achr7P18330_001	Banana	nucleus	37.5	39.94
TraesCS7A01G152500.1	Wheat	nucleus	42.99	39.61
TraesCS5B01G243300.1	Wheat	nucleus	31.4	38.43
AT5G18270.1	Thale cress	nucleus	39.02	38.21
AT3G04060.1	Thale cress	nucleus	39.33	38.17
TraesCS2A01G101200.1	Wheat	nucleus	32.01	38.04
GSMUA_Achr3P18020_001	Banana	nucleus	33.84	37.88
Os01t0104500-01	Rice	cytosol, mitochondrion, nucleus	36.28	37.19
GSMUA_Achr6P08600_001	Banana	nucleus	39.33	37.18
TraesCS7A01G569300.1	Wheat	cytosol	40.85	37.02
CDY02636	Canola	nucleus	37.8	36.8
GSMUA_Achr6P32290_001	Banana	nucleus	38.72	36.71
CDY53250	Canola	nucleus	37.5	36.61
Bra002148.1-P	Field mustard	nucleus	37.5	36.61
Bra023669.1-P	Field mustard	nucleus	37.5	36.61
Bra006449.1-P	Field mustard	nucleus	37.2	36.31
Os01t0393100-01	Rice	nucleus	36.28	36.28
CDY51238	Canola	nucleus	37.2	36.2
CDX70804	Canola	nucleus	37.2	36.2
TraesCS4A01G130600.1	Wheat	nucleus	37.5	35.96
CDY50879	Canola	cytoskeleton, cytosol, nucleus	37.5	35.86
Bra040153.1-P	Field mustard	nucleus	37.5	35.86
Bra031950.1-P	Field mustard	cytoskeleton, cytosol, nucleus	37.5	35.76
CDY42901	Canola	nucleus	37.5	35.76
TraesCS7A01G194700.1	Wheat	nucleus	37.8	35.53
TraesCS7A01G189200.1	Wheat	nucleus	37.8	35.53
TraesCS4A01G242700.1	Wheat	cytosol, mitochondrion, nucleus	32.32	35.45
KRG94783	Soybean	nucleus	43.6	35.31
TraesCS7A01G569100.1	Wheat	nucleus	40.55	35.0
KRH06738	Soybean	nucleus	42.99	34.64
KRH08479	Soybean	nucleus	42.07	33.66
KRH70130	Soybean	nucleus	42.07	33.66
VIT_08s0007g07640.t01	Wine grape	nucleus	41.16	33.5
TraesCS2A01G101100.1	Wheat	cytosol, nucleus, plastid	34.76	32.76
TraesCS2A01G101400.1	Wheat	cytosol	35.06	32.58
TraesCS2A01G338300.1	Wheat	nucleus	35.06	32.39
KXG28945	Sorghum	cytoskeleton, nucleus, peroxisome	35.98	31.81
Zm00001d040189_P002	Maize	mitochondrion, nucleus, peroxisome	37.8	31.71
TraesCS5A01G275900.1	Wheat	nucleus	35.37	31.61
EES02651	Sorghum	nucleus	38.41	31.5
OQU89451	Sorghum	cytosol	34.45	30.38
EES17917	Sorghum	cytosol	36.89	30.1
TraesCS5A01G049100.2	Wheat	cytosol, nucleus, peroxisome	28.05	30.07
TraesCS7A01G247600.1	Wheat	extracellular	30.49	29.67
TraesCS2A01G101000.1	Wheat	cytosol, nucleus, plastid	34.15	29.32
TraesCS7A01G334800.1	Wheat	nucleus	32.01	28.93
Zm00001d008403_P001	Maize	plastid	28.35	28.88
TraesCS7A01G464100.1	Wheat	nucleus	26.83	28.66
TraesCS7A01G464800.1	Wheat	nucleus	26.22	27.92
TraesCS7A01G305200.1	Wheat	cytosol	24.39	27.68
TraesCS2A01G382400.1	Wheat	nucleus	25.91	27.42
TraesCS5A01G143100.1	Wheat	nucleus	33.23	27.05
TraesCS6A01G378600.1	Wheat	nucleus	24.7	26.47
TraesCS6A01G378500.1	Wheat	nucleus	24.39	25.72
GSMUA_Achr8P21470_001	Banana	nucleus	38.41	24.42
TraesCS2A01G462500.1	Wheat	plastid	24.7	24.18

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31744	PANTHER:PTHR31744:SF23	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS5A01G245900	EnsemblPlants:TraesCS5A01G245900.2	SEG:seg

Description

No Description!

Coordinates

chr5A:-:459002806..459003899

Molecular Weight (calculated)

36553.1 Da

IEP (calculated)

8.990

GRAVY (calculated)

-0.455

Length

328 amino acids

Sequence
(BLAST)

001: MADHLQVQQQ HQHQLELPSG FRFHPTDEEI ITSYLVPKVL NPTFTAIAIA EVDLNKNDPY ELPKKAKMGE KEWYFYCQKD RKYPTGIQTN RATKAGYWKA
101: TGKDKEIFHP LPTLIGMKKT LVFYKGRAPR GEKTNWVMHE YRLEISKQPA YGPSTAIAKA AAINASSKKE RVVCKIFHKN IGVKKVVTPS YAMHMPMFIG
201: GEQQQGSLNS CTFPPPMDYG ASLSLAPPLF LSEDSSYQLH AARVGLAMTG SLVLPMVNNP HHEMMGGNPM VSYQQQQMMQ MQMQMGADQC FMVGVEPGSE
301: SSSMVSREGV DRLGNNVQGN GATTTIDS

Best Arabidopsis Sequence Match ( AT3G04060.1 )
(BLAST)

001: MVEEGGVVVN QGGDQEVVDL PPGFRFHPTD EEIITHYLKE KVFNIRFTAA AIGQADLNKN EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATVSGY
101: WKATGKDKEI FRGKGCLVGM KKTLVFYTGR APKGEKTNWV MHEYRLDGKY SYHNLPKTAR DEWVVCRVFH KNAPSTTITT TKQLSRIDSL DNIDHLLDFS
201: SLPPLIDPGF LGQPGPSFSG ARQQHDLKPV LHHPTTAPVD NTYLPTQALN FPYHSVHNSG SDFGYGAGSG NNNKGMIKLE HSLVSVSQET GLSSDVNTTA
301: TPEISSYPMM MNPAMMDGSK SACDGLDDLI FWEDLYTS

Arabidopsis Description

anac046NAC domain-containing protein 46 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.